Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS19050	BPHYT_RS19055	BPHYT_RS19060	BPHYT_RS19065	BPHYT_RS19070
carbon source	D-Glucosamine Hydrochloride (C)	+0.1	-2.3	-0.1	-0.1	+0.1
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.5	-0.0	-0.3	-0.5	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.0	+0.3	-0.8	+0.2	-1.0
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.1	-0.2	-0.6	+0.1	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.3	-0.1	-0.7	-0.1	-0.4
nitrogen source	L-Proline (N)	+0.2	-0.3	-0.2	-0.1	-0.7
supernatant control	Vogels_fungal_media; pH 5.5	+0.1	-0.1	-0.4	-0.3	-0.3
nitrogen source	L-Serine (N)	-0.4	-0.2	-0.2	-0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	+0.4	-0.5	-0.2	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.2	+0.1	+0.3	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.5	+0.1	-0.4	-0.4	-0.2
phage	36hr PHYTO11 MOI 1	+0.3	+0.0	-0.1	-0.5	+0.4
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.3	-0.2	+0.1	+0.1	+0.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.6	-0.1	+0.3	-0.3	-0.0
phage	24hr PHYTO9 MOI 0.1	-0.1	+0.2	+0.4	-0.4	+0.4
phage	36hr PHYTO6 MOI 10	+0.1	+0.2	+0.2	-0.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.7	+0.3	-0.4	+0.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.3	+0.2	+0.2	+0.5
phage	36hr PHYTO2 MOI 1	+0.0	+0.3	-0.3	+0.0	+0.7
phage	24hr PHYTO10 MOI 1	+0.2	+0.2	+0.2	-0.3	+0.4
phage	24hr PHYTO4 MOI 10	+0.1	+0.2	+0.1	-0.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.2	+0.3	-0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	+0.5	+0.4	+0.0	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.0	+0.4	+0.4	+0.2
phage	24hr PHYTO3 MOI 10	+0.3	+0.3	+0.5	-0.3	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.6	-0.0	+0.3	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.4	-0.1	+0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.3	+0.3	+0.3	+0.3	+0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.1	+0.4	+0.6	+0.2	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	+0.6	+0.5	-0.2	+0.1