Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS19005	BPHYT_RS19010	BPHYT_RS19015	BPHYT_RS19020	BPHYT_RS19025
motility	outer cut, LB soft agar motility assay	-1.2	-5.2	-4.3	-0.3	-2.6
motility	outer cut, LB soft agar motility assay	-1.2	-5.2	-4.3	-0.4	-2.3
motility	inner cut, LB soft agar motility assay	-0.8	-3.0	-2.9	-0.1	-1.9
motility	inner cut, LB soft agar motility assay	-0.1	-3.1	-2.5	-0.4	-1.6
motility	inner cut, LB soft agar motility assay	-0.6	-1.9	-2.6	-0.4	-1.7
motility	outer cut, LB soft agar motility assay	-0.8	-1.5	-2.3	-0.1	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	-1.7	-1.6	-1.1	-0.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-3.1	-1.2	-1.3	+0.0	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.2	-1.7	-0.8	-0.6
r2a control	R2A control	-0.5	-1.1	-1.0	+0.0	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	-0.8	-0.7	-0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	-1.6	-1.7	+0.3	+1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	-1.0	-1.4	-0.1	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.8	-1.1	-0.7	+0.3	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.3	-1.0	-0.9	-0.3	+1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.3	-1.1	-0.7	+0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.4	-0.5	+0.0	+1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.1	+0.4	+0.1	-0.2	+1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.5	+0.3	-0.3	+1.4
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.4	+0.1	+0.7	+1.2
vitamin	No vitamins t2	-0.3	+0.5	+0.4	+0.5	+0.9
carbon source	D-Glucose (C)	-0.3	+0.6	+0.6	+0.3	+0.8
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.4	+0.0	+0.5	+0.7	+1.4
stress	Bacitracin 0.125 mg/ml	-0.2	+0.3	+0.4	+0.6	+1.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.5	+0.8	+0.3	+0.8
carbon source	D-Ribose (C)	+0.5	+0.5	+0.6	+0.2	+0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.6	+0.5	+0.1	+1.0
carbon source	Malonic (C)	+0.6	+0.1	+0.2	+1.0	+1.1
carbon source	Malonic (C)	+0.8	+0.2	+0.2	+0.6	+1.4
stress	Bacitracin 0.25 mg/ml	-0.0	+0.9	+1.1	+1.4	+2.7