Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS19000	BPHYT_RS19005	BPHYT_RS19010	BPHYT_RS19015	BPHYT_RS19020
motility	outer cut, LB soft agar motility assay	-3.2	-1.2	-5.2	-4.3	-0.4
motility	outer cut, LB soft agar motility assay	-3.0	-1.2	-5.2	-4.3	-0.3
motility	inner cut, LB soft agar motility assay	-2.3	-0.8	-3.0	-2.9	-0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-2.8	-3.1	-1.2	-1.3	+0.0
motility	inner cut, LB soft agar motility assay	-2.7	-0.6	-1.9	-2.6	-0.4
motility	inner cut, LB soft agar motility assay	-1.8	-0.1	-3.1	-2.5	-0.4
motility	outer cut, LB soft agar motility assay	-1.9	-0.8	-1.5	-2.3	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1	-0.6	-1.7	-1.6	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.0	-1.3	-1.0	-0.9	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.7	-0.7	-1.6	-1.7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	-0.9	-1.0	-1.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.3	-0.1	-0.2	-1.7	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-1.9	-0.8	-1.1	-0.7	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1	-0.8	-0.8	-0.7	-0.4
r2a control	R2A control	-0.8	-0.5	-1.1	-1.0	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-1.3	-0.3	-1.1	-0.7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.4	-0.6	-0.4	-0.5	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.2	-0.5	-0.5	-0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.3	-1.1	+0.4	+0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.1	-0.7	+0.2	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-1.0	-0.5	-0.3	-0.3	+0.6
carbon source	Xylitol (C)	-1.4	-0.8	+0.4	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.2	-0.5	+0.5	+0.3	-0.3
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.7	-0.5	+0.4	+0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-1.1	-0.1	-0.3	+0.1	+0.5
vitamin	No vitamins t2	-0.7	-0.3	+0.5	+0.4	+0.5
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.5	-0.4	-0.1	+0.7
carbon source	Gly-Glu (C)	+0.2	+0.3	+0.7	+0.7	+0.3
carbon source	Malonic (C)	+0.5	+0.6	+0.1	+0.2	+1.0
stress	Bacitracin 0.25 mg/ml	-0.3	-0.0	+0.9	+1.1	+1.4