Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS18920	BPHYT_RS18925	BPHYT_RS18930	BPHYT_RS18935	BPHYT_RS18940
motility	outer cut, LB soft agar motility assay	+0.1	-4.9	-1.3	-3.0	-4.7
motility	outer cut, LB soft agar motility assay	+0.1	-3.8	-0.8	-4.4	-4.1
motility	inner cut, LB soft agar motility assay	+0.0	-3.2	-1.5	-3.2	-3.0
stress	Bacitracin 0.25 mg/ml	-0.1	-3.6	-0.7	-3.2	-2.5
motility	inner cut, LB soft agar motility assay	+0.2	-2.5	-1.4	-3.0	-2.3
motility	inner cut, LB soft agar motility assay	+0.2	-2.1	-1.8	-2.2	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-2.0	-1.0	-2.4	-2.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-2.1	-0.9	-2.3	-1.7
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.3	-2.3	-1.7	-1.8	-1.4
motility	outer cut, LB soft agar motility assay	+0.1	-2.4	-0.5	-2.1	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-1.6	-0.8	-1.9	-1.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-1.4	-0.7	-1.1	-1.5
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.6	-1.6	-1.5	-0.6	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+1.4	+0.1	+1.5	+1.5
carbon source	L-Arabinose (C)	-0.2	+1.2	+0.5	+1.5	+1.3
carbon source	D-Ribose (C)	-0.1	+1.3	+0.5	+1.4	+1.3
carbon source	2-Deoxy-D-Ribose (C)	+0.1	+1.1	+0.7	+1.5	+1.2
carbon source	2-Deoxy-D-Ribose (C)	+0.7	+1.1	+0.4	+1.4	+1.2
carbon source	2-Deoxy-D-Ribose (C)	+0.3	+1.2	+0.6	+1.6	+1.2
carbon source	Tween 20 (C)	-0.0	+1.6	+0.8	+1.2	+1.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.5	+0.8	+0.7	+1.5	+1.5
carbon source	2-Deoxy-D-Ribose (C)	+0.5	+1.2	+0.7	+1.4	+1.2
nitrogen source	D-Alanine (N)	+0.3	+1.1	+0.7	+1.7	+1.2
nitrogen source	Carnitine Hydrochloride (N)	+0.1	+1.4	+0.6	+1.7	+1.4
nitrogen source	L-Serine (N)	+0.0	+1.2	+1.0	+1.7	+1.4
nitrogen source	L-Isoleucine (N)	-0.1	+1.4	+0.8	+2.3	+1.5
carbon source	D-Xylose (C)	-0.2	+1.7	+0.5	+2.0	+1.8
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.3	+2.2	+0.6	+2.3	+1.3
carbon source	Xylitol (C)	+0.1	+1.8	+0.7	+2.1	+1.7
carbon source	Gly-Glu (C)	+0.1	+1.8	+0.6	+2.4	+2.1