Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS18835	BPHYT_RS18840	BPHYT_RS18845	BPHYT_RS18850	BPHYT_RS18855
motility	outer cut, LB soft agar motility assay	-2.8	-5.0	-5.0	-0.0	-5.6
motility	outer cut, LB soft agar motility assay	-2.7	-3.8	-4.8	+0.2	-5.5
motility	inner cut, LB soft agar motility assay	-0.7	-3.1	-3.4	+0.1	-3.6
motility	inner cut, LB soft agar motility assay	-0.6	-3.1	-3.0	-0.1	-2.8
motility	inner cut, LB soft agar motility assay	-0.7	-3.2	-3.5	+0.3	-2.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.4	-2.3	-2.3	+0.5	-2.4
motility	outer cut, LB soft agar motility assay	-0.4	-2.8	-2.7	+0.4	-2.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.6	-1.9	-1.8	-0.2	-1.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.9	-1.4	-1.6	+0.7	-1.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.1	-1.3	-1.1	+0.1	-1.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-3.5	-0.3	-0.7	+0.4	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.8	-1.9	-1.9	-0.8	+1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-1.6	-1.4	-1.3	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.4	-1.2	-0.8	+0.2	-0.8
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-2.8	-0.0	-0.3	-0.2	-0.5
nophagecontrol	36hr Phyto Lib only	-2.8	-0.2	-0.0	-0.0	-0.5
stress	Bacitracin 0.25 mg/ml	-2.6	+0.9	+0.8	-0.4	-2.2
r2a control	R2A control	-0.8	-1.2	-1.3	+0.2	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-2.3	-0.0	-0.7	-0.4	+0.0
phage	36hr PHYTO8 MOI 0.1	-2.8	+0.2	-0.1	-0.3	-0.4
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.8	-0.8	-0.9	+0.3	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.0	-1.5	-1.4	+0.3	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	-0.5	-0.6	-1.5	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.7	-0.8	-1.2	+0.8
carbon source	Xylitol (C)	+1.5	-0.9	-1.0	-0.8	+0.9
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.9	-0.0	-0.5	+3.3	-0.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.4	-1.2	-1.7	+6.0	-1.5
carbon source	D-Xylose (C)	+2.1	-0.3	-0.5	+0.3	+1.1
carbon source	Malonic (C)	+2.3	+0.2	+0.0	-0.3	+0.7
carbon source	Gly-Glu (C)	+2.3	+0.3	+0.3	-0.0	+1.6