Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS18765	BPHYT_RS18770	BPHYT_RS18775	BPHYT_RS18780	BPHYT_RS18785
motility	outer cut, LB soft agar motility assay	-3.2	N.D.	-3.8	-3.6	-5.7
motility	outer cut, LB soft agar motility assay	-2.7	N.D.	-4.4	-2.2	-5.7
motility	inner cut, LB soft agar motility assay	-3.4	N.D.	-2.9	-1.5	-3.8
motility	inner cut, LB soft agar motility assay	-3.1	N.D.	-2.6	-1.4	-2.3
motility	inner cut, LB soft agar motility assay	-2.9	N.D.	-2.9	-1.4	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.6	N.D.	-2.3	-2.3	-2.7
motility	outer cut, LB soft agar motility assay	-2.6	N.D.	-2.1	-1.3	-2.7
stress	Bacitracin 0.25 mg/ml	-0.9	N.D.	-2.2	-2.1	-3.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.3	N.D.	-1.8	-1.6	-1.7
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-2.0	N.D.	-1.3	-1.0	-1.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.2	N.D.	-1.4	-1.1	-2.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-2.6	N.D.	-0.6	-0.4	-2.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	N.D.	-1.4	-1.4	-1.9
vitamin	No vitamins t2	-1.4	N.D.	+1.2	+0.7	+1.1
carbon source	D-Ribose (C)	-1.6	N.D.	+1.3	+1.1	+1.5
nitrogen source	D-Alanine (N)	-1.3	N.D.	+1.3	+1.4	+1.1
vitamin	With vitamins t2	-1.0	N.D.	+1.3	+0.9	+1.4
nitrogen source	L-Phenylalanine (N)	-0.8	N.D.	+1.2	+1.3	+1.1
carbon source	L-Phenylalanine (C)	-0.8	N.D.	+1.2	+1.2	+1.2
carbon source	D-Sorbitol (C)	-0.8	N.D.	+1.4	+1.3	+1.1
carbon source	L-Asparagine (C)	-0.7	N.D.	+1.4	+1.2	+1.3
stress	Paraquat dichloride 0.064 mg/ml	-0.8	N.D.	+1.5	+1.2	+1.3
nitrogen source	L-Citrulline (N)	-0.9	N.D.	+1.3	+1.2	+1.7
carbon source	Xylitol (C)	-0.6	N.D.	+1.2	+1.3	+1.7
nitrogen source	Carnitine Hydrochloride (N)	-0.6	N.D.	+1.3	+1.2	+1.8
carbon source	Malonic (C)	-0.4	N.D.	+1.4	+1.1	+1.8
nitrogen source	L-Isoleucine (N)	-0.6	N.D.	+1.4	+1.3	+2.0
carbon source	Malonic (C)	-0.3	N.D.	+1.4	+1.4	+2.0
carbon source	D-Xylose (C)	-0.1	N.D.	+1.8	+1.8	+1.9
carbon source	Gly-Glu (C)	+0.0	N.D.	+2.3	+2.2	+2.2