Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS18750 and BPHYT_RS18755 overlap by 1 nucleotidesBPHYT_RS18755 and BPHYT_RS18760 are separated by 91 nucleotidesBPHYT_RS18760 and BPHYT_RS18765 overlap by 4 nucleotidesBPHYT_RS18765 and BPHYT_RS18770 are separated by 216 nucleotides BPHYT_RS18750: BPHYT_RS18750 - flagellar biosynthetic protein FlhB, at 4,217,667 to 4,218,026 _RS18750 BPHYT_RS18755: BPHYT_RS18755 - flagellar hook-length control protein FliK, at 4,218,026 to 4,219,459 _RS18755 BPHYT_RS18760: BPHYT_RS18760 - flagellar biosynthesis protein FliT, at 4,219,551 to 4,219,877 _RS18760 BPHYT_RS18765: BPHYT_RS18765 - flagellar biosynthesis protein FliS, at 4,219,874 to 4,220,308 _RS18765 BPHYT_RS18770: BPHYT_RS18770 - flagellar hook-basal body protein FliE, at 4,220,525 to 4,220,860 _RS18770
Group Condition BPHYT_RS18750 BPHYT_RS18755 BPHYT_RS18760 BPHYT_RS18765 BPHYT_RS18770
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.3 N.D. -5.6 -2.6 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.2 N.D. -6.5 -2.0 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 N.D. -4.2 -0.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. -4.9 -0.3 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 N.D. -4.1 -0.9 N.D.
carbon source D-Galactose (C) -0.6 N.D. -2.4 -1.7 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 N.D. -3.4 -1.2 N.D.
stress Bacitracin 0.25 mg/ml -0.1 N.D. -3.1 -0.9 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 N.D. -3.4 -0.8 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -0.3 N.D. -2.4 -1.2 N.D.
motility inner cut, LB soft agar motility assay +0.1 N.D. -0.6 -3.4 N.D.
carbon source D-Glucose (C) -0.6 N.D. -2.1 -1.1 N.D.
carbon source L-Rhamnose (C) -0.8 N.D. -1.7 -1.2 N.D.
phage 36hr PHYTO2 MOI 1 -0.3 N.D. -3.9 +0.5 N.D.
carbon source D-Ribose (C) -0.2 N.D. -1.9 -1.6 N.D.
stress Zinc 0.5 mM -0.7 N.D. -1.9 -1.0 N.D.
nitrogen source L-Isoleucine (N) -0.2 N.D. -2.5 -0.6 N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.3 N.D. -2.1 -1.0 N.D.
stress Nickel (II) chloride 0.5 mM +0.1 N.D. -1.1 -2.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 N.D. -1.5 -1.7 N.D.
motility inner cut, LB soft agar motility assay +0.4 N.D. -0.4 -3.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. -2.9 -0.4 N.D.
motility outer cut, LB soft agar motility assay +0.8 N.D. -0.7 -3.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. -1.9 -1.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. -2.5 -0.6 N.D.
phage P. phyto PHYTO2 MOI 1 +0.2 N.D. -3.2 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. -2.8 -0.2 N.D.
motility inner cut, LB soft agar motility assay +0.8 N.D. -0.2 -2.9 N.D.
phage 36hr PHYTO3 MOI 1 +0.3 N.D. -2.7 +0.6 N.D.
motility outer cut, LB soft agar motility assay +0.8 N.D. +0.3 -2.6 N.D.
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