Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS18625 and BPHYT_RS18630 overlap by 4 nucleotidesBPHYT_RS18630 and BPHYT_RS18635 are separated by 103 nucleotidesBPHYT_RS18635 and BPHYT_RS18640 are separated by 264 nucleotidesBPHYT_RS18640 and BPHYT_RS18645 overlap by 4 nucleotides BPHYT_RS18625: BPHYT_RS18625 - allophanate hydrolase, at 4,189,082 to 4,189,735 _RS18625 BPHYT_RS18630: BPHYT_RS18630 - allophanate hydrolase, at 4,189,732 to 4,190,784 _RS18630 BPHYT_RS18635: BPHYT_RS18635 - LamB/YcsF family protein, at 4,190,888 to 4,191,640 _RS18635 BPHYT_RS18640: BPHYT_RS18640 - membrane protein, at 4,191,905 to 4,192,654 _RS18640 BPHYT_RS18645: BPHYT_RS18645 - membrane protein, at 4,192,651 to 4,193,607 _RS18645
Group Condition BPHYT_RS18625 BPHYT_RS18630 BPHYT_RS18635 BPHYT_RS18640 BPHYT_RS18645
carbon source L-Glutamine (C) -1.2 -1.3 -1.6 -0.8 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -1.9 -1.3 -0.2 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.7 -1.9 +0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 -0.7 -2.0 -0.2 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -1.1 -1.1 -0.2 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 -1.8 -1.9 +0.0 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -1.4 -0.9 -0.3 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.1 -1.2 -0.5 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -0.8 -1.2 +0.0 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -1.0 -0.6 -0.1 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.5 -1.3 +0.3 -0.1
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.7 -0.6 -0.9 -0.7 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.9 -0.4 -1.9 +0.4 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 -1.5 -1.1 -0.0 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -1.3 -1.3 -0.2 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9 -0.6 -1.1 +0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -0.3 -0.7 -1.6 +0.7 +0.2
phage 36hr PHYTO8 MOI 0.1 +0.1 -1.4 +0.7 -0.7 -0.2
carbon source adipate (C) +0.1 +0.4 -2.3 -0.0 +0.5
motility outer cut, LB soft agar motility assay -0.7 -1.2 +0.3 +0.2 +0.6
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 -0.8 +1.0 -0.0 -0.1
phage 36hr PHYTO10 MOI 10 -0.1 -1.4 +0.9 +0.3 -0.4
phage 24hr PHYTO2 MOI 0.1 -0.3 -0.7 +1.3 -0.5 -0.1
phage 36hr PHYTO10 MOI 10 -0.2 -0.8 +1.2 -0.5 -0.0
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.5 -1.1 +0.3 +0.5 -0.3
phage 36hr PHYTO2 MOI 1 -0.4 -1.2 +1.6 -0.3 +0.2
phage 24hr PHYTO4 MOI 10 -0.1 -0.4 +1.3 -0.8 +0.3
phage 36hr PHYTO1 MOI 10 +0.1 -1.1 +1.1 +0.4 -0.2
phage 24hr PHYTO6 MOI 10 +0.2 -0.8 +2.1 -0.7 +0.0
nitrogen source L-Lysine (N) +0.9 +0.1 -0.6 +0.9 +0.6
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