Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS18620	BPHYT_RS18625	BPHYT_RS18630	BPHYT_RS18635	BPHYT_RS18640
carbon source	L-Glutamine (C)	-1.7	-1.2	-1.3	-1.6	-0.8
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-2.0	-0.7	-0.6	-0.9	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1	-0.8	-1.1	-1.1	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.8	-1.9	-1.3	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.5	-1.7	-1.9	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.0	-1.8	-1.9	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.6	-1.1	-1.2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	-0.4	-1.4	-0.9	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.1	-1.3	-1.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.1	-1.5	-1.1	-0.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-1.7	-0.3	-0.9	+0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	-0.5	-0.7	-2.0	-0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-2.1	-0.5	-0.9	+0.6	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.4	-1.5	-1.3	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.3	-0.9	-0.4	-1.9	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-0.4	-0.3	-0.7	-1.6	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.7	-0.8	+0.3	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.9	-0.6	-1.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	-0.6	-0.8	-1.2	+0.0
carbon source	adipate (C)	+0.2	+0.1	+0.4	-2.3	-0.0
phage	36hr PHYTO8 MOI 0.1	-0.0	+0.1	-1.4	+0.7	-0.7
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.9	-0.8	+1.0	-0.0
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.6	+0.5	-1.1	+0.3	+0.5
phage	24hr PHYTO2 MOI 0.1	+0.1	-0.3	-0.7	+1.3	-0.5
phage	36hr PHYTO10 MOI 10	+0.3	-0.2	-0.8	+1.2	-0.5
phage	36hr PHYTO2 MOI 1	+0.4	-0.4	-1.2	+1.6	-0.3
carbon source	Disodium Glutarate (C)	+1.8	-0.1	-0.2	-1.2	-0.3
nitrogen source	L-Lysine (N)	-0.6	+0.9	+0.1	-0.6	+0.9
phage	24hr PHYTO6 MOI 10	-0.1	+0.2	-0.8	+2.1	-0.7
phage	36hr PHYTO1 MOI 10	+0.7	+0.1	-1.1	+1.1	+0.4