Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS18595 and BPHYT_RS18600 overlap by 4 nucleotidesBPHYT_RS18600 and BPHYT_RS18605 are separated by 26 nucleotidesBPHYT_RS18605 and BPHYT_RS18610 are separated by 82 nucleotidesBPHYT_RS18610 and BPHYT_RS18615 are separated by 77 nucleotides BPHYT_RS18595: BPHYT_RS18595 - multifunctional CCA protein, at 4,182,788 to 4,184,020 _RS18595 BPHYT_RS18600: BPHYT_RS18600 - glutathione S-transferase, at 4,184,017 to 4,184,670 _RS18600 BPHYT_RS18605: BPHYT_RS18605 - NAD-dependent dehydratase, at 4,184,697 to 4,185,650 _RS18605 BPHYT_RS18610: BPHYT_RS18610 - lytic transglycosylase, at 4,185,733 to 4,187,700 _RS18610 BPHYT_RS18615: BPHYT_RS18615 - 5-formyltetrahydrofolate cyclo-ligase, at 4,187,778 to 4,188,320 _RS18615
Group Condition BPHYT_RS18595 BPHYT_RS18600 BPHYT_RS18605 BPHYT_RS18610 BPHYT_RS18615
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. -0.4 -1.5 -3.4 -0.8
stress Bacitracin 0.25 mg/ml N.D. -0.4 -0.1 -4.8 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -1.4 -0.6 -2.0 -0.5
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. +0.8 -2.5 +0.3 -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.7 -0.4 -1.8 -0.4
phage 24hr PHYTO9 MOI 0.1 N.D. +0.8 +0.0 -2.7 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.5 -0.4 -2.1 +0.2
nophagecontrol 24hr Phyto Lib only N.D. +0.8 -0.2 -1.9 -0.3
phage 36hr PHYTO2 MOI 1 N.D. +1.2 +0.1 -2.6 -0.2
phage 36hr PHYTO11 MOI 1 N.D. +0.9 -0.1 -1.6 -0.6
phage 24hr PHYTO10 MOI 10 N.D. +1.0 -0.3 -2.4 +0.4
phage 36hr PHYTO8 MOI 0.1 N.D. +1.2 -0.2 -1.8 -0.4
phage 24hr PHYTO1 MOI 10 N.D. +1.1 +0.1 -2.4 -0.0
phage 36hr PHYTO MOI 0.1 N.D. +1.6 -0.1 -2.2 -0.4
nophagecontrol 36hr Phyto Lib Only N.D. +1.2 -0.1 -1.6 -0.6
phage 36hr PHYTO1 MOI 10 N.D. +0.8 -0.2 -2.3 +0.6
phage 24hr PHYTO6 MOI 0.1 N.D. +0.7 +0.0 -2.2 +0.3
phage 36hr PHYTO3 MOI 1 N.D. +1.0 -0.3 -1.9 +0.1
phage 24hr PHYTO10 MOI 10 N.D. +1.1 +0.0 -1.7 -0.4
phage 24hr PHYTO2 MOI 0.1 N.D. +1.1 -0.1 -2.2 +0.1
phage 24hr PHYTO2 MOI 1 N.D. +1.2 -0.3 -1.8 -0.0
phage PHYTO3 MOI 0.1 N.D. +1.4 -0.0 -2.6 +0.4
phage 36hr PHYTO10 MOI 1 N.D. +1.5 -0.2 -1.9 -0.0
phage 36hr PHYTO11 MOI 0.1 N.D. +1.6 -0.1 -1.8 -0.2
phage 24hr PHYTO MOI 0.1 N.D. +1.6 +0.0 -2.2 +0.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. +1.8 -1.0 -0.3 -0.7
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. +2.3 -0.7 -0.7 -0.9
phage 24hr PHYTO1 MOI 1 N.D. +1.5 -0.1 -1.4 +0.3
nophagecontrol 36hr Phyto Lib only N.D. +1.5 +0.0 -1.7 +0.6
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. +2.4 -0.9 -0.4 -0.4
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