Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS18445 and BPHYT_RS18450 are separated by 75 nucleotidesBPHYT_RS18450 and BPHYT_RS18455 are separated by 471 nucleotidesBPHYT_RS18455 and BPHYT_RS18460 are separated by 13 nucleotidesBPHYT_RS18460 and BPHYT_RS18465 are separated by 115 nucleotides BPHYT_RS18445: BPHYT_RS18445 - hypothetical protein, at 4,145,863 to 4,146,114 _RS18445 BPHYT_RS18450: BPHYT_RS18450 - voltage-gated chloride channel protein, at 4,146,190 to 4,147,500 _RS18450 BPHYT_RS18455: BPHYT_RS18455 - arsenic resistance operon repressor, at 4,147,972 to 4,148,337 _RS18455 BPHYT_RS18460: BPHYT_RS18460 - arsenic transporter ATPase, at 4,148,351 to 4,150,105 _RS18460 BPHYT_RS18465: BPHYT_RS18465 - membrane protein, at 4,150,221 to 4,151,483 _RS18465
Group Condition BPHYT_RS18445 BPHYT_RS18450 BPHYT_RS18455 BPHYT_RS18460 BPHYT_RS18465
phage PHYTO3 MOI 0.1 -0.4 +0.0 -0.5 -0.2 -1.1
phage 24hr PHYTO1 MOI 10 -0.4 -0.0 -0.2 -0.1 -1.2
phage 24hr PHYTO10 MOI 10 -0.2 +0.1 -0.6 -0.1 -1.0
phage 24hr PHYTO3 MOI 10 -0.3 -0.1 -0.5 +0.1 -1.0
phage 36hr PHYTO10 MOI 10 -0.2 +0.1 -0.3 -0.1 -1.0
phage 36hr PHYTO8 MOI 10 +0.2 +0.1 -0.2 +0.1 -1.6
phage 36hr PHYTO10 MOI 10 +0.0 +0.2 -0.1 -0.1 -1.2
phage 36hr PHYTO9 MOI 0.1 -0.2 -0.1 +0.3 -0.4 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.3 -0.5 +0.1 +0.3
phage 36hr PHYTO2 MOI 1 +0.3 +0.1 -0.3 -0.2 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -0.1 -0.5 +0.2 +0.1
phage 36hr PHYTO9 MOI 1 +0.3 +0.1 -0.2 -0.2 -0.9
phage 24hr PHYTO7 MOI 10 -0.8 +0.2 +0.2 -0.2 -0.2
phage 24hr PHYTO4 MOI 10 +0.5 -0.1 +0.2 -0.4 -0.8
phage 24hr PHYTO11 MOI 1 +0.3 +0.1 +0.1 -0.1 -1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 -0.1 -0.4 +0.4 +0.4
phage 24hr PHYTO8 MOI 1 +0.2 +0.2 -0.4 +0.3 -0.7
phage 36hr PHYTO8 MOI 10 +0.3 +0.3 +0.2 -0.1 -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 +0.3 -0.2 +0.1 -0.2
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.2 +0.7 +0.3 +0.4 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.5 +0.4 +0.4 +0.1 +0.3
motility outer cut, LB soft agar motility assay +0.6 +0.3 -0.0 +0.3 +0.6
supernatant control Vogels_fungal_media 0.1X +0.7 +0.1 +0.5 +0.2 +0.4
motility outer cut, LB soft agar motility assay +0.5 +0.1 +0.2 +0.4 +0.8
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +1.1 +0.2 +0.2 +0.2 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +1.1 +0.4 +0.3 +0.1 +0.5
carbon source Malonic (C) +2.0 +0.0 +0.1 -0.1 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +1.2 +0.3 +0.2 +0.0 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +1.1 +0.4 +0.3 +0.3 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +1.7 +0.4 -0.1 +0.3 +0.9
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