Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS18375 and BPHYT_RS18380 are separated by 154 nucleotidesBPHYT_RS18380 and BPHYT_RS18385 are separated by 224 nucleotidesBPHYT_RS18385 and BPHYT_RS18390 are separated by 203 nucleotidesBPHYT_RS18390 and BPHYT_RS18395 are separated by 1118 nucleotides BPHYT_RS18375: BPHYT_RS18375 - hypothetical protein, at 4,133,646 to 4,133,924 _RS18375 BPHYT_RS18380: BPHYT_RS18380 - hypothetical protein, at 4,134,079 to 4,134,288 _RS18380 BPHYT_RS18385: BPHYT_RS18385 - 4-hydroxyphenylpyruvate dioxygenase, at 4,134,513 to 4,135,265 _RS18385 BPHYT_RS18390: BPHYT_RS18390 - membrane protein, at 4,135,469 to 4,136,401 _RS18390 BPHYT_RS18395: BPHYT_RS18395 - hypothetical protein, at 4,137,520 to 4,138,206 _RS18395
Group Condition BPHYT_RS18375 BPHYT_RS18380 BPHYT_RS18385 BPHYT_RS18390 BPHYT_RS18395
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. N.D. -0.4 -0.6 -0.2
carbon source Azelaic (C) N.D. N.D. +0.0 -0.5 -0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.1 -0.1 -0.8
carbon source Sebacic (C) N.D. N.D. +0.1 -0.3 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.1 -0.1 -0.9
motility inner cut, LB soft agar motility assay N.D. N.D. +0.1 -0.5 -0.4
nophagecontrol 36hr Phyto Lib Only N.D. N.D. +0.2 -0.4 -0.6
phage 36hr PHYTO9 MOI 1 N.D. N.D. +0.3 -0.2 -0.8
phage 36hr PHYTO10 MOI 1 N.D. N.D. +0.3 +0.1 -0.9
phage 36hr PHYTO6 MOI 10 N.D. N.D. +0.5 -0.1 -0.7
phage 36hr PHYTO7 MOI 1 N.D. N.D. +0.4 +0.1 -0.8
phage 36hr PHYTO4 MOI 0.1 N.D. N.D. +0.5 -0.1 -0.6
nophagecontrol 24hr Phyto Lib Only N.D. N.D. +0.4 +0.1 -0.6
phage 24hr PHYTO10 MOI 10 N.D. N.D. +0.5 -0.5 +0.1
phage 24hr PHYTO4 MOI 0.1 N.D. N.D. +0.6 -0.5 -0.0
phage 24hr PHYTO3 MOI 0.1 N.D. N.D. +0.5 -0.5 +0.1
phage P. phyto corn MOI 1 N.D. N.D. +0.4 +0.5 -0.8
phage 36hr PHYTO1 MOI 10 N.D. N.D. +0.5 +0.1 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.4 -0.6 +0.5
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent N.D. N.D. +0.3 +0.5 -0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +0.3 +0.6 -0.5
phage 36hr PHYTO8 MOI 10 N.D. N.D. +0.5 +0.2 -0.4
phage 36hr PHYTO6 MOI 1 N.D. N.D. +0.5 +0.3 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. N.D. -0.3 +0.2 +0.6
carbon source Malonic (C) N.D. N.D. -0.1 +0.4 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.4 -0.1 +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. +0.2 +0.3 +0.5
phage 24hr PHYTO6 MOI 1 N.D. N.D. +0.2 +0.5 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.6 +0.2 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.2 +0.9 +0.4
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BPHYT_RS18375
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BPHYT_RS18380
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BPHYT_RS18395
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