Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS18345	BPHYT_RS18350	BPHYT_RS18355	BPHYT_RS18360	BPHYT_RS18365
carbon source	Suberic (C)	-0.2	-0.2	-0.3	-0.0	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.1	-0.1	+0.1	+0.1	-0.9
supernatant control	Vogels_fungal_media; pH 5.5	-0.2	-0.3	-0.3	+0.2	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.5	-0.2	-0.3	+0.1	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.0	-0.2	+0.1	+0.2	-0.8
carbon source	D-Glucose (C)	-0.1	+0.0	-0.1	+0.2	-0.8
carbon source	Sebacic (C)	+0.3	-0.2	-0.1	-0.1	-0.6
phage	36hr PHYTO9 MOI 1	-0.3	-0.0	-0.3	+0.1	+0.6
motility	outer cut, LB soft agar motility assay	-0.3	+0.4	+0.3	+0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.3	+0.0	-0.2	+0.5
phage	24hr PHYTO8 MOI 1	-0.3	+0.1	+0.0	+0.4	+0.4
phage	36hr PHYTO11 MOI 1	-0.1	+0.1	-0.3	+0.4	+0.7
phage	24hr PHYTO10 MOI 10	-0.1	+0.1	-0.1	+0.3	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.4	+0.2	+0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.1	+0.5	+0.0	+0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.1	+0.4	+0.1	+0.2	+0.5
carbon source	Malonic (C)	-0.2	+0.1	-0.0	+0.3	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.3	+0.2	+0.3	+0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.1	+0.2	+0.3	+0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.0	+0.2	+0.4	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.1	+0.2	+0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.2	+0.3	+0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.5	+0.1	+0.5	+0.1
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.3	+0.3	+0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.3	+0.3	+0.5	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.3	+0.1	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.4	+0.3	+0.5	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.6	+0.3	+0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	+0.5	+0.3	+0.7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.6	+0.4	+0.7	+0.2