Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS18325	BPHYT_RS18330	BPHYT_RS18335	BPHYT_RS18340	BPHYT_RS18345
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.1	-0.2	-0.1	-4.7	-0.1
carbon source	D-Xylose (C)	-0.2	+0.1	-0.2	-4.5	+0.0
nitrogen source	L-Isoleucine (N)	-0.1	-0.1	-0.2	-3.6	+0.0
carbon source	Phenylacetic 5 mM (C)	+0.3	-0.6	+0.2	-3.8	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.1	-0.1	+0.0	-3.6	-0.2
carbon source	Tween 20 (C)	-0.4	-0.2	-0.3	-2.6	-0.0
carbon source	L-Lactate (C)	-0.2	-0.2	+0.0	-3.2	+0.1
supernatant control	Vogels_fungal_media; pH 5.5	-0.0	-0.3	-0.6	-2.4	-0.2
nitrogen source	L-Asparagine (N)	+0.1	+0.1	-0.0	-3.8	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.3	+0.4	-0.3	-3.4	-0.3
nitrogen source	L-Phenylalanine (N)	-0.1	+0.0	-0.1	-3.1	+0.0
nitrogen source	Uridine (N)	+0.2	+0.2	-0.0	-3.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.3	-0.2	-2.5	-0.1
nitrogen source	L-Serine (N)	+0.1	-0.1	+0.3	-3.5	+0.0
nitrogen source	NAG (N)	+0.3	+0.2	-0.0	-3.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	+0.2	-0.5	-2.6	+0.0
nitrogen source	L-Lysine (N)	+0.3	+0.5	-0.1	-3.3	+0.1
nitrogen source	Ammonium chloride (N)	+0.3	-0.0	+0.0	-2.8	-0.0
nitrogen source	L-Alanine (N)	+0.3	+0.1	-0.1	-3.0	+0.1
carbon source	L-Alanine (C)	+0.0	+0.2	+0.1	-2.7	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.1	+0.3	-3.1	+0.1
temperature	LB, 23C	-0.2	+0.2	-0.2	-2.4	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.2	+0.5	-3.2	+0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.5	-0.8	-0.2	-1.5	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.6	+0.1	-2.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-0.0	+0.8	-2.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+1.1	+0.4	-2.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.0	+0.5	-0.1	-2.0	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	+1.0	+0.5	-2.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.4	+0.7	+1.1	+0.6