Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS18310 and BPHYT_RS18315 are separated by 313 nucleotidesBPHYT_RS18315 and BPHYT_RS18320 are separated by 363 nucleotidesBPHYT_RS18320 and BPHYT_RS18325 are separated by 92 nucleotidesBPHYT_RS18325 and BPHYT_RS18330 are separated by 265 nucleotides BPHYT_RS18310: BPHYT_RS18310 - malic enzyme, at 4,118,059 to 4,120,341 _RS18310 BPHYT_RS18315: BPHYT_RS18315 - MFS transporter, at 4,120,655 to 4,121,887 _RS18315 BPHYT_RS18320: BPHYT_RS18320 - orotate phosphoribosyltransferase, at 4,122,251 to 4,122,937 _RS18320 BPHYT_RS18325: BPHYT_RS18325 - LuxR family transcriptional regulator, at 4,123,030 to 4,123,719 _RS18325 BPHYT_RS18330: BPHYT_RS18330 - phosphatidylethanolamine-binding protein, at 4,123,985 to 4,124,587 _RS18330
Group Condition BPHYT_RS18310 BPHYT_RS18315 BPHYT_RS18320 BPHYT_RS18325 BPHYT_RS18330
carbon source D-Gluconic Acid (C) +0.1 +0.0 -7.8 +0.1 -0.2
carbon source L-Malic (C) -0.4 +0.1 -6.9 -0.0 -0.3
carbon source Putrescine (C) -0.2 -0.1 -6.9 +0.0 -0.4
carbon source L-Phenylalanine (C) -0.1 -0.0 -7.7 +0.3 -0.0
carbon source L-Proline (C) -0.5 +0.1 -7.2 +0.2 -0.0
nitrogen source L-Glutamine (N) -0.2 +0.1 -7.2 -0.0 +0.2
carbon source m-Inositol (C) -0.2 +0.0 -7.3 +0.2 +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.2 +0.1 -7.3 +0.4 -0.2
carbon source D-Galactose (C) +0.0 +0.0 -7.4 +0.0 +0.1
nitrogen source D-Alanine (N) +0.1 +0.1 -7.6 +0.2 +0.1
carbon source Tween 20 (C) -0.9 +0.1 -5.6 -0.4 -0.2
nutrient casaminos -0.0 -0.1 -6.7 -0.2 +0.0
nitrogen source L-Asparagine (N) -0.3 +0.0 -6.9 +0.1 +0.1
carbon source L-Glutamine (C) -1.5 +0.2 -6.1 +0.2 +0.4
nitrogen source Ammonium chloride (N) -0.1 -0.0 -7.0 +0.3 -0.0
carbon source L-Asparagine (C) -0.1 -0.1 -6.4 -0.2 +0.0
carbon source NAG (C) -0.0 +0.0 -6.5 +0.0 -0.3
carbon source L-Lactate (C) -0.0 +0.0 -6.4 -0.2 -0.2
nitrogen source L-Phenylalanine (N) +0.0 +0.0 -6.6 -0.1 +0.0
carbon source succinate (C) -0.2 +0.1 -6.3 -0.2 +0.1
carbon source D-Glucose (C) -0.1 +0.1 -6.5 +0.1 -0.1
carbon source Protocatechuic Acid (C) -0.4 +0.0 -6.3 +0.5 -0.2
nitrogen source NAG (N) -0.0 +0.1 -6.8 +0.3 +0.2
carbon source D-Fructose (C) +0.0 +0.1 -6.4 +0.1 +0.1
nutrient L-Histidine +0.2 -0.1 -6.2 -0.1 +0.2
carbon source D-Sorbitol (C) +0.1 -0.1 -6.2 +0.3 -0.1
carbon source Disodium Glutarate (C) +0.5 -0.2 -6.3 +0.0 +0.1
carbon source pyruvate (C) +0.1 +0.1 -6.5 +0.3 +0.2
nitrogen source L-Lysine (N) -0.4 -0.1 -6.0 +0.3 +0.5
carbon source D-Lactate (C) +0.2 +0.4 -6.3 +0.2 +0.1
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BPHYT_RS18310
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BPHYT_RS18315
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