Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS18235	BPHYT_RS18240	BPHYT_RS18245	BPHYT_RS18250	BPHYT_RS18255
carbon source	L-Phenylalanine (C)	N.D.	+0.2	-0.0	-6.0	-5.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	N.D.	+0.1	-0.0	-2.6	-4.6
nitrogen source	L-Phenylalanine (N)	N.D.	+0.2	-0.0	-3.0	-4.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	-0.2	-0.2	-0.7	-5.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	N.D.	+0.0	-0.1	-1.9	-3.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.1	-0.1	-1.3	-4.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	N.D.	-0.0	-0.0	-2.2	-2.7
carbon source	Phenylacetic 5 mM (C)	N.D.	+0.1	+0.2	-2.0	-3.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	+0.2	-0.2	-1.6	-3.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.0	+0.1	-2.2	-2.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.1	+0.0	-1.9	-2.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.0	-0.0	-1.0	-2.9
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	+0.1	-1.0	-2.9
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.0	+0.0	-1.2	-2.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.1	+0.1	-1.3	-2.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.3	-0.1	-1.7	-2.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.1	-0.0	-1.2	-2.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.0	+0.1	-1.5	-2.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.2	+0.2	-2.1	-1.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	-0.2	-1.2	-2.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	+0.2	+0.0	-1.2	-2.4
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	N.D.	+0.2	+0.1	-0.8	-2.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.2	+0.1	-1.5	-2.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.1	+0.0	-1.2	-2.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.0	+0.1	-1.4	-2.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	+0.1	-1.4	-1.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	-0.0	-0.8	-2.4
tn7 efficiency	Outgrowth after Tn7 transformation	N.D.	+0.1	+0.1	-0.5	-2.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.0	+0.2	-1.6	-1.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.2	+0.1	-1.1	-1.9