Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS18230	BPHYT_RS18235	BPHYT_RS18240	BPHYT_RS18245	BPHYT_RS18250
carbon source	L-Phenylalanine (C)	N.D.	N.D.	+0.2	-0.0	-6.0
nitrogen source	L-Phenylalanine (N)	N.D.	N.D.	+0.2	-0.0	-3.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	N.D.	N.D.	+0.1	-0.0	-2.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	N.D.	N.D.	-0.0	-0.0	-2.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	+0.0	+0.1	-2.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	N.D.	N.D.	+0.0	-0.1	-1.9
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	N.D.	-0.2	-0.1	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	-0.0	+0.0	-1.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	-0.1	+0.0	-1.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-0.0	+0.1	-1.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.1	+0.0	-1.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	-0.1	-0.0	-1.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.0	+0.1	-1.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.0	+0.0	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	-0.2	-0.0	-1.4
carbon source	Phenylacetic 5 mM (C)	N.D.	N.D.	+0.1	+0.2	-2.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	-0.2	+0.2	-1.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.2	+0.2	-2.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	N.D.	+0.2	-0.2	-1.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.1	+0.1	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	+0.1	-0.1	-1.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.0	-0.3	-1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-0.0	+0.2	-1.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.3	-0.1	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	-0.0	+0.1	-1.5
carbon source	Phenylacetic 5 mM (C)	N.D.	N.D.	+0.1	+0.2	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	-0.0	+0.3	-1.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.1	+0.1	-1.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.2	+0.1	-1.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	N.D.	+0.4	+0.4	-0.9