Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS17945 and BPHYT_RS17950 are separated by 4 nucleotidesBPHYT_RS17950 and BPHYT_RS17955 are separated by 201 nucleotidesBPHYT_RS17955 and BPHYT_RS17960 are separated by 264 nucleotidesBPHYT_RS17960 and BPHYT_RS17965 are separated by 252 nucleotides BPHYT_RS17945: BPHYT_RS17945 - cytochrome C biogenesis protein, at 4,051,543 to 4,052,748 _RS17945 BPHYT_RS17950: BPHYT_RS17950 - cytochrome C biogenesis protein ResB, at 4,052,753 to 4,054,966 _RS17950 BPHYT_RS17955: BPHYT_RS17955 - cytochrome C, at 4,055,168 to 4,055,821 _RS17955 BPHYT_RS17960: BPHYT_RS17960 - GTP-binding protein EngB, at 4,056,086 to 4,056,739 _RS17960 BPHYT_RS17965: BPHYT_RS17965 - delta-aminolevulinic acid dehydratase, at 4,056,992 to 4,057,990 _RS17965
Group Condition BPHYT_RS17945 BPHYT_RS17950 BPHYT_RS17955 BPHYT_RS17960 BPHYT_RS17965
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -6.6 N.D. -2.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -4.9 N.D. -3.4 N.D. N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -6.5 N.D. -1.6 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -6.2 N.D. -1.9 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -6.2 N.D. -1.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -4.3 N.D. -3.3 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -5.6 N.D. -1.7 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -6.2 N.D. -1.0 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -5.8 N.D. -1.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -3.4 N.D. -3.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -3.4 N.D. -3.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.4 N.D. -3.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.5 N.D. -3.5 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -4.6 N.D. -1.3 N.D. N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.8 N.D. -1.1 N.D. N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -4.1 N.D. -1.4 N.D. N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.7 N.D. -0.9 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.5 N.D. -3.0 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -3.4 N.D. -2.0 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -4.3 N.D. -1.0 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -4.5 N.D. -0.8 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.4 N.D. -1.8 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.4 N.D. -2.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -3.0 N.D. -2.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.3 N.D. -2.6 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -4.1 N.D. -0.8 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.5 N.D. -0.3 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.1 N.D. -1.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.7 N.D. -2.9 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.2 N.D. -2.3 N.D. N.D.
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