Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS17845 and BPHYT_RS17850 are separated by 164 nucleotidesBPHYT_RS17850 and BPHYT_RS17855 are separated by 121 nucleotidesBPHYT_RS17855 and BPHYT_RS17860 are separated by 294 nucleotidesBPHYT_RS17860 and BPHYT_RS17865 are separated by 187 nucleotides BPHYT_RS17845: BPHYT_RS17845 - amino acid dehydrogenase, at 4,026,794 to 4,028,068 _RS17845 BPHYT_RS17850: BPHYT_RS17850 - dihydropyrimidine dehydrogenase subunit A, at 4,028,233 to 4,029,702 _RS17850 BPHYT_RS17855: BPHYT_RS17855 - glutamate synthase, at 4,029,824 to 4,034,527 _RS17855 BPHYT_RS17860: BPHYT_RS17860 - transposase, at 4,034,822 to 4,035,529 _RS17860 BPHYT_RS17865: BPHYT_RS17865 - membrane protein, at 4,035,717 to 4,036,442 _RS17865
Group Condition BPHYT_RS17845 BPHYT_RS17850 BPHYT_RS17855 BPHYT_RS17860 BPHYT_RS17865
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.1 N.D. -6.5 -1.5 -1.0
carbon source D-Mannose (C) -0.1 N.D. -6.3 -0.4 -0.2
nitrogen source Ammonium chloride (N) +0.1 N.D. -6.7 -0.1 -0.2
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.0 N.D. -5.8 -0.7 -0.4
nitrogen source L-Alanine (N) +0.1 N.D. -6.6 -0.3 -0.0
carbon source D-Sorbitol (C) +0.1 N.D. -6.0 -0.5 -0.3
nitrogen source L-Lysine (N) +0.2 N.D. -5.3 -0.8 -0.7
nitrogen source NAG (N) +0.1 N.D. -6.1 -0.5 -0.0
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. -5.5 +0.0 -0.9
carbon source Tween 20 (C) +0.0 N.D. -5.4 -0.6 -0.5
nitrogen source Carnitine Hydrochloride (N) -0.1 N.D. -5.8 -0.4 -0.2
carbon source D,L-Lactate (C) -0.2 N.D. -6.4 +0.4 -0.2
nitrogen source Putrescine (N) +0.1 N.D. -5.8 -0.5 -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.0 N.D. -6.4 -0.1 +0.0
carbon source D-Xylose (C) +0.0 N.D. -4.8 +0.2 -1.8
nitrogen source Uridine (N) -0.2 N.D. -6.2 +0.3 -0.1
carbon source Trisodium citrate (C) -0.0 N.D. -5.3 -0.3 -0.6
carbon source D-Fructose (C) +0.0 N.D. -5.9 -0.2 -0.2
nitrogen source D-Alanine (N) +0.2 N.D. -5.6 -0.4 -0.3
carbon source m-Inositol (C) +0.1 N.D. -5.8 +0.1 -0.5
carbon source NAG (C) -0.0 N.D. -6.1 +0.4 -0.3
carbon source L-Malic (C) +0.2 N.D. -5.8 -0.1 -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.1 N.D. -5.8 -0.3 +0.1
carbon source D-Glucose (C) +0.1 N.D. -5.9 +0.4 -0.4
carbon source L-Lactate (C) -0.0 N.D. -5.8 +0.2 -0.2
carbon source pyruvate (C) +0.2 N.D. -6.2 +0.4 -0.1
carbon source D-Gluconic Acid (C) +0.0 N.D. -5.9 +0.3 -0.2
carbon source L-Rhamnose (C) +0.1 N.D. -5.8 +0.2 -0.2
carbon source succinate (C) -0.1 N.D. -5.7 +0.6 -0.4
carbon source D-Lactate (C) +0.1 N.D. -5.7 +0.5 -0.1
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