Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS17805	BPHYT_RS17810	BPHYT_RS17815	BPHYT_RS17820	BPHYT_RS17825
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1	-0.6	-0.0	-0.2	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-1.0	-1.4	-0.2	+0.1	+0.1
phage	36hr PHYTO3 MOI 0.1	-2.4	-0.1	-0.1	+0.2	+0.1
phage	36hr PHYTO3 MOI 1	-1.2	-0.9	-0.6	+0.1	+0.4
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.5	-0.6	+0.1	-0.3	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-1.6	-0.1	+0.4	+0.2	-0.3
phage	36hr PHYTO4 MOI 1	-1.2	-0.7	+0.2	-0.1	+0.8
nophagecontrol	36hr Phyto Lib Only	-0.4	-0.9	-0.3	+0.2	+0.5
phage	P. phyto PHYTO2 MOI 1	-1.2	-0.5	+0.5	-0.1	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.2	-0.2	+0.5	+0.5	-0.1
carbon source	Phenylacetic 5 mM (C)	+0.4	-0.2	+0.2	+0.7	-1.4
nophagecontrol	36hr Phyto Lib Only	-0.8	+0.4	-0.4	+0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	+1.0	-0.1	-0.2	-0.3
carbon source	Malonic (C)	+0.9	-0.6	+0.2	+0.3	-0.9
phage	36hr PHYTO4 MOI 1	-0.7	-0.6	+0.2	+0.2	+1.0
supernatant control	Vogels_fungal_media; pH 5.5	-0.9	+0.6	-0.5	-0.1	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.0	+0.9	+0.1	+0.3	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	+0.7	+0.4	-0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.1	+0.1	+0.3	+0.4	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	+0.1	-0.2	+0.7	+0.6
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	+0.7	-0.7	+0.2	+0.8	-0.1
phage	PHYTO3 MOI 0.1	-0.1	-0.4	+0.5	+0.4	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	+0.1	+0.4	+1.6	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.7	+0.5	+0.6	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.6	+0.5	+0.5	+0.5
nitrogen source	L-Isoleucine (N)	+0.9	-0.1	+0.2	-0.1	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+1.0	-0.5	+0.3	+0.8	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.7	-0.1	+0.5	+0.8
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.7	-0.3	+0.8	+0.9	+0.3
motility	outer cut, LB soft agar motility assay	+0.5	-0.7	+0.2	+0.5	+2.0