Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS17800	BPHYT_RS17805	BPHYT_RS17810	BPHYT_RS17815	BPHYT_RS17820
phage	36hr PHYTO3 MOI 0.1	-0.8	-2.4	-0.1	-0.1	+0.2
phage	36hr PHYTO1 MOI 10	-1.4	-0.9	-0.5	-0.2	-0.2
phage	36hr PHYTO4 MOI 1	-1.2	-1.2	-0.7	+0.2	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.1	-1.0	-1.4	-0.2	+0.1
phage	36hr PHYTO3 MOI 1	+0.2	-1.2	-0.9	-0.6	+0.1
phage	36hr PHYTO3 MOI 1	-1.2	-0.3	-0.6	-0.1	-0.2
carbon source	Tween 20 (C)	-0.8	-1.0	+0.2	-0.2	-0.3
phage	24hr PHYTO MOI 0.1	-1.7	+0.1	-0.1	-0.3	-0.0
phage	36hr PHYTO11 MOI 1	-0.4	-0.5	-0.9	-0.3	+0.2
phage	36hr PHYTO11 MOI 0.1	-0.6	-1.2	-0.3	+0.2	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-1.1	-0.6	-0.0	-0.2
phage	24hr PHYTO4 MOI 10	-0.9	-0.3	-0.5	+0.3	-0.3
phage	36hr PHYTO7 MOI 0.1	-0.7	-0.7	-0.4	+0.2	+0.3
phage	P. phyto PHYTO2 MOI 1	+0.0	-1.2	-0.5	+0.5	-0.1
phage	24hr PHYTO3 MOI 10	-1.2	+0.3	-0.5	-0.1	+0.2
supernatant control	Vogels_fungal_media; pH 5.5	-0.3	-0.9	+0.6	-0.5	-0.1
phage	36hr PHYTO11 MOI 1	-0.9	-0.5	-0.1	-0.1	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.5	-1.6	-0.1	+0.4	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-1.2	-0.2	+0.5	+0.5
carbon source	Protocatechuic Acid (C)	-0.6	+0.1	-0.6	+0.7	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-1.0	+0.9	+0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	-1.1	+0.1	+0.3	+0.4
carbon source	Malonic (C)	-0.1	+0.9	-0.6	+0.2	+0.3
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	-0.3	+0.7	-0.7	+0.2	+0.8
motility	outer cut, LB soft agar motility assay	+0.4	+0.5	-0.7	+0.2	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.8	+0.1	+0.4	+1.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.5	+0.6	+0.5	+0.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.0	-0.4	+0.7	+0.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.1	+1.0	-0.5	+0.3	+0.8
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.0	+0.7	-0.3	+0.8	+0.9