Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS17730 and BPHYT_RS17735 overlap by 4 nucleotidesBPHYT_RS17735 and BPHYT_RS17740 are separated by 171 nucleotidesBPHYT_RS17740 and BPHYT_RS17745 overlap by 4 nucleotidesBPHYT_RS17745 and BPHYT_RS17750 are separated by 115 nucleotides BPHYT_RS17730: BPHYT_RS17730 - metal-dependent hydrolase, at 4,004,444 to 4,005,199 _RS17730 BPHYT_RS17735: BPHYT_RS17735 - ABC transporter ATP-binding protein, at 4,005,196 to 4,006,128 _RS17735 BPHYT_RS17740: BPHYT_RS17740 - anti-anti-sigma regulatory factor, at 4,006,300 to 4,006,593 _RS17740 BPHYT_RS17745: BPHYT_RS17745 - toluene tolerance family protein, at 4,006,590 to 4,007,222 _RS17745 BPHYT_RS17750: BPHYT_RS17750 - VacJ family lipoprotein, at 4,007,338 to 4,008,360 _RS17750
Group Condition BPHYT_RS17730 BPHYT_RS17735 BPHYT_RS17740 BPHYT_RS17745 BPHYT_RS17750
pH LB, pH4 +0.1 +0.3 N.D. -4.8 -0.3
stress Benzethonium chloride 0.0016 mM +0.4 +0.3 N.D. -4.3 -1.0
pH LB, pH4 +0.0 -0.1 N.D. -4.0 -0.3
stress Chloride 200 mM -0.2 -0.4 N.D. -2.8 -0.5
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.0 -0.3 N.D. -3.3 +0.0
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.1 -0.3 N.D. -2.9 -0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -0.1 N.D. -2.7 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 -0.2 N.D. -2.5 -0.3
carbon source Phenylacetic 5 mM (C) +0.1 -1.7 N.D. -1.3 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 -0.2 N.D. -2.4 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -0.3 -0.8 N.D. -1.6 +0.1
stress Bacitracin 0.25 mg/ml +0.3 +0.4 N.D. -4.5 +1.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.4 N.D. -2.1 -0.2
stress Polymyxin B sulfate 0.0625 mg/ml +0.1 -0.0 N.D. -2.3 -0.3
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.1 N.D. -2.6 -0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.1 N.D. -2.5 -0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.2 -0.4 N.D. -2.1 +0.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.1 N.D. -2.2 -0.3
phage 24hr PHYTO MOI 0.1 +0.4 -0.8 N.D. -1.6 +0.0
phage 36hr PHYTO1 MOI 1 +0.3 -0.5 N.D. -1.9 +0.1
stress A22 0.005 mg/ml +0.4 +0.2 N.D. -1.9 -0.5
nophagecontrol 36hr Phyto Lib only +0.3 -0.3 N.D. -1.7 +0.3
stress Lomefloxacin 0.001 mM +1.6 +1.5 N.D. -2.2 -0.3
phage 24hr PHYTO4 MOI 10 -0.3 -1.4 N.D. +1.3 +1.8
phage 24hr PHYTO6 MOI 10 -0.2 -0.4 N.D. +0.9 +1.5
phage PHYTO3 MOI 0.1 +0.2 -0.4 N.D. +1.0 +1.2
phage 24hr PHYTO3 MOI 10 +0.2 -0.2 N.D. +0.6 +1.7
phage 24hr PHYTO3 MOI 10 +0.2 -0.2 N.D. +1.0 +1.6
phage P. phyto PHYTO2 MOI 1 -0.0 -0.6 N.D. +2.2 +1.6
phage P. phyto PHYTO2 MOI 1 -0.0 +0.1 N.D. +2.3 +1.4
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