Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS17710 and BPHYT_RS17715 are separated by 57 nucleotidesBPHYT_RS17715 and BPHYT_RS17720 overlap by 4 nucleotidesBPHYT_RS17720 and BPHYT_RS17725 are separated by 111 nucleotidesBPHYT_RS17725 and BPHYT_RS17730 are separated by 15 nucleotides BPHYT_RS17710: BPHYT_RS17710 - histidinol dehydrogenase, at 4,000,740 to 4,002,062 _RS17710 BPHYT_RS17715: BPHYT_RS17715 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 4,002,120 to 4,002,818 _RS17715 BPHYT_RS17720: BPHYT_RS17720 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,002,815 to 4,004,077 _RS17720 BPHYT_RS17725: BPHYT_RS17725 - BolA family transcriptional regulator, at 4,004,189 to 4,004,428 _RS17725 BPHYT_RS17730: BPHYT_RS17730 - metal-dependent hydrolase, at 4,004,444 to 4,005,199 _RS17730
Group Condition BPHYT_RS17710 BPHYT_RS17715 BPHYT_RS17720 BPHYT_RS17725 BPHYT_RS17730
supernatant control Vogels_fungal_media; pH 5.5 N.D. -7.1 N.D. -1.2 -0.3
carbon source L-Phenylalanine (C) N.D. -5.7 N.D. -1.2 -0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. -6.4 N.D. -0.3 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days N.D. -5.1 N.D. -0.9 -0.3
carbon source Protocatechuic Acid (C) N.D. -5.6 N.D. -0.3 -0.3
nitrogen source L-Citrulline (N) N.D. -6.3 N.D. +0.1 +0.1
carbon source Tween 20 (C) N.D. -5.7 N.D. -0.0 -0.1
carbon source L-Fucose (C) N.D. -4.7 N.D. -0.7 -0.5
nitrogen source L-Asparagine (N) N.D. -5.1 N.D. -0.8 +0.1
carbon source L-Asparagine (C) N.D. -4.6 N.D. -0.6 -0.5
carbon source pyruvate (C) N.D. -5.4 N.D. -0.2 -0.1
carbon source Xylitol (C) N.D. -3.8 N.D. -1.5 -0.4
carbon source D-Gluconic Acid (C) N.D. -5.0 N.D. -0.5 -0.0
carbon source Malonic (C) N.D. -4.4 N.D. -0.7 -0.4
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. -5.1 N.D. -0.3 -0.1
nitrogen source L-Serine (N) N.D. -5.5 N.D. -0.3 +0.3
carbon source D-Glucose 20 mM (C) N.D. -5.0 N.D. -0.3 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -4.0 N.D. -0.9 -0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. -4.1 N.D. -1.1 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -4.3 N.D. -1.0 +0.1
carbon source D-Lactate (C) N.D. -4.8 N.D. -0.2 -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. -2.8 N.D. -2.1 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -4.1 N.D. -0.9 -0.2
carbon source L-Proline (C) N.D. -4.6 N.D. -0.4 -0.1
carbon source NAG (C) N.D. -4.6 N.D. -0.3 -0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -2.8 N.D. -1.6 -0.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. -4.5 N.D. -0.0 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. -4.9 N.D. -0.0 +0.3
nitrogen source L-Glutamic (N) N.D. -5.0 N.D. -0.4 +0.9
nitrogen source L-Alanine (N) N.D. -4.7 N.D. +0.0 +0.4
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BPHYT_RS17710
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