Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS17660	BPHYT_RS17665	BPHYT_RS17670	BPHYT_RS17675	BPHYT_RS17680
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.6	-0.3	-7.3	-7.4	-7.7
carbon source	L-Glutamine (C)	+0.1	+0.0	-7.5	-7.3	-8.0
carbon source	L-Alanine (C)	-0.0	+0.0	-7.2	-7.1	-7.8
carbon source	D-Glucose (C)	-0.1	-0.0	-7.1	-7.0	-7.7
carbon source	L-Malic (C)	-0.0	+0.1	-6.5	-7.3	-8.1
carbon source	NAG (C)	+0.1	-0.0	-6.5	-7.3	-8.0
carbon source	L-Tryptophan (C)	-0.2	-0.1	-6.0	-7.4	-8.1
carbon source	succinate (C)	-0.1	+0.0	-7.5	-5.9	-8.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.0	+0.1	-6.9	-6.9	-7.5
nitrogen source	L-Alanine (N)	-0.2	+0.1	-6.7	-7.0	-7.2
carbon source	L-Rhamnose (C)	-0.2	-0.0	-7.6	-6.1	-6.9
carbon source	L-Asparagine (C)	-0.2	+0.1	-5.4	-7.3	-8.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.4	+0.1	-6.7	-6.8	-7.4
nitrogen source	L-Asparagine (N)	-0.0	+0.2	-6.8	-7.0	-6.2
carbon source	D-Glucosamine Hydrochloride (C)	+0.1	-0.1	-6.5	-5.6	-7.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.7	-0.1	-6.1	-7.4	-5.5
nitrogen source	L-Glutamine (N)	+0.1	+0.2	-5.3	-7.2	-7.5
nitrogen source	L-Phenylalanine (N)	-0.1	-0.2	-4.9	-7.1	-7.3
nutrient	Min media with glucose	-0.0	-0.1	-5.7	-6.5	-7.2
carbon source	D-Gluconic Acid (C)	-0.0	-0.1	-5.8	-5.3	-8.1
nitrogen source	Putrescine (N)	-0.2	+0.2	-6.6	-6.9	-5.8
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.4	+0.1	-6.1	-6.4	-6.5
carbon source	Tween 20 (C)	-0.3	+0.2	-4.5	-7.0	-7.6
supernatant control	Vogels_fungal_media; pH 5.5	-0.1	+0.1	-7.3	-4.1	-7.7
carbon source	Trisodium citrate (C)	+0.2	+0.1	-6.0	-7.2	-6.2
nitrogen source	L-Citrulline (N)	+0.2	+0.0	-4.9	-7.0	-7.2
carbon source	D,L-Lactate (C)	-0.1	+0.1	-7.3	-5.0	-6.7
nitrogen source	D-Alanine (N)	+0.1	-0.2	-4.8	-7.0	-7.2
nitrogen source	L-Proline (N)	+0.3	-0.1	-6.8	-7.1	-5.0
nitrogen source	L-Serine (N)	+0.4	-0.0	-6.7	-6.9	-5.4