Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS17530	BPHYT_RS17535	BPHYT_RS17540	BPHYT_RS17545	BPHYT_RS17550
nitrogen source	L-Proline (N)	-3.6	-0.3	+0.1	+0.0	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-2.6	-0.5	-0.5	-0.3	-0.2
carbon source	L-Glutamine (C)	-0.9	-0.1	-1.9	-0.4	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.9	+0.3	-0.4	-0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-2.5	+0.4	-0.1	-0.4	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-2.4	-0.1	-0.3	+0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-3.0	-0.0	-0.2	-0.1	+0.7
carbon source	Tween 20 (C)	-2.0	+0.7	+0.2	-1.1	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-2.3	+0.5	-0.1	-0.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-2.5	+0.5	-0.2	-0.2	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-1.2	+0.3	-0.9	-0.6	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-1.2	-0.2	-0.8	-0.7	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.4	-0.1	-0.3	+0.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-2.9	+0.7	-0.3	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	-0.0	-0.6	+0.5	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-2.5	+0.2	-0.1	+0.3	-0.1
stress	Bacitracin 0.25 mg/ml	-3.1	+0.1	+0.2	+1.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-2.1	+0.7	-0.2	-0.1	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-2.2	+0.4	-0.5	+0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.4	-0.1	-0.7	+0.8	+0.2
stress	Nickel (II) chloride 1 mM	-1.3	+0.1	-0.5	+1.0	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.9	+0.4	-0.4	+0.2	+0.6
phage	P. phyto PHYTO2 MOI 1	-2.2	+0.5	+0.1	+0.6	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.9	-0.3	-0.2	+1.4	+0.3
motility	outer cut, LB soft agar motility assay	-1.5	-0.1	+0.2	+1.1	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.4	+0.6	-0.2	+1.4	-0.0
phage	36hr PHYTO2 MOI 1	-1.1	-0.3	+0.3	+1.3	-0.7
stress	Benzethonium chloride 0.0016 mM	+0.9	+0.2	+0.5	-1.6	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.7	+0.3	-0.2	+0.5	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.6	+0.6	-0.2	+1.4	+0.1