Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS17530 and BPHYT_RS17535 are separated by 160 nucleotidesBPHYT_RS17535 and BPHYT_RS17540 are separated by 87 nucleotidesBPHYT_RS17540 and BPHYT_RS17545 are separated by 481 nucleotidesBPHYT_RS17545 and BPHYT_RS17550 are separated by 111 nucleotides BPHYT_RS17530: BPHYT_RS17530 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 3,969,668 to 3,970,267 _RS17530 BPHYT_RS17535: BPHYT_RS17535 - extradiol ring-cleavage dioxygenase class III protein subunit B, at 3,970,428 to 3,971,213 _RS17535 BPHYT_RS17540: BPHYT_RS17540 - L-aspartate/L-glutamate/L-glutamine:H+ symporter (from data), at 3,971,301 to 3,972,896 _RS17540 BPHYT_RS17545: BPHYT_RS17545 - cold-shock protein, at 3,973,378 to 3,973,581 _RS17545 BPHYT_RS17550: BPHYT_RS17550 - molecular chaperone, at 3,973,693 to 3,974,943 _RS17550
Group Condition BPHYT_RS17530 BPHYT_RS17535 BPHYT_RS17540 BPHYT_RS17545 BPHYT_RS17550
nitrogen source L-Proline (N) -3.6 -0.3 +0.1 +0.0 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.6 -0.5 -0.5 -0.3 -0.2
carbon source L-Glutamine (C) -0.9 -0.1 -1.9 -0.4 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.9 +0.3 -0.4 -0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.5 +0.4 -0.1 -0.4 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.4 -0.1 -0.3 +0.3 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -3.0 -0.0 -0.2 -0.1 +0.7
carbon source Tween 20 (C) -2.0 +0.7 +0.2 -1.1 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.3 +0.5 -0.1 -0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.5 +0.5 -0.2 -0.2 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.2 +0.3 -0.9 -0.6 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.2 -0.2 -0.8 -0.7 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.4 -0.1 -0.3 +0.5 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.9 +0.7 -0.3 +0.2 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.5 -0.0 -0.6 +0.5 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.5 +0.2 -0.1 +0.3 -0.1
stress Bacitracin 0.25 mg/ml -3.1 +0.1 +0.2 +1.0 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.1 +0.7 -0.2 -0.1 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -2.2 +0.4 -0.5 +0.2 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.4 -0.1 -0.7 +0.8 +0.2
stress Nickel (II) chloride 1 mM -1.3 +0.1 -0.5 +1.0 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.9 +0.4 -0.4 +0.2 +0.6
phage P. phyto PHYTO2 MOI 1 -2.2 +0.5 +0.1 +0.6 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.9 -0.3 -0.2 +1.4 +0.3
motility outer cut, LB soft agar motility assay -1.5 -0.1 +0.2 +1.1 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.4 +0.6 -0.2 +1.4 -0.0
phage 36hr PHYTO2 MOI 1 -1.1 -0.3 +0.3 +1.3 -0.7
stress Benzethonium chloride 0.0016 mM +0.9 +0.2 +0.5 -1.6 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.7 +0.3 -0.2 +0.5 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.6 +0.6 -0.2 +1.4 +0.1
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