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Protein
Homologs
Fitness for 5 genes in
Burkholderia phytofirmans PsJN
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BPHYT_RS17530 and BPHYT_RS17535 are separated by 160 nucleotides
BPHYT_RS17535 and BPHYT_RS17540 are separated by 87 nucleotides
BPHYT_RS17540 and BPHYT_RS17545 are separated by 481 nucleotides
BPHYT_RS17545 and BPHYT_RS17550 are separated by 111 nucleotides
BPHYT_RS17530: BPHYT_RS17530 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 3,969,668 to 3,970,267
_RS17530
BPHYT_RS17535: BPHYT_RS17535 - extradiol ring-cleavage dioxygenase class III protein subunit B, at 3,970,428 to 3,971,213
_RS17535
BPHYT_RS17540: BPHYT_RS17540 - L-aspartate/L-glutamate/L-glutamine:H+ symporter
(from data)
, at 3,971,301 to 3,972,896
_RS17540
BPHYT_RS17545: BPHYT_RS17545 - cold-shock protein, at 3,973,378 to 3,973,581
_RS17545
BPHYT_RS17550: BPHYT_RS17550 - molecular chaperone, at 3,973,693 to 3,974,943
_RS17550
Group
Condition
BPHYT
_RS17530
BPHYT
_RS17535
BPHYT
_RS17540
BPHYT
_RS17545
BPHYT
_RS17550
nitrogen source
L-Proline (N)
-3.6
-0.3
+0.1
+0.0
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
-2.6
-0.5
-0.5
-0.3
-0.2
carbon source
L-Glutamine (C)
-0.9
-0.1
-1.9
-0.4
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-2.9
+0.3
-0.4
-0.1
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
-2.5
+0.4
-0.1
-0.4
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
-2.4
-0.1
-0.3
+0.3
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
-3.0
-0.0
-0.2
-0.1
+0.7
carbon source
Tween 20 (C)
-2.0
+0.7
+0.2
-1.1
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
-2.3
+0.5
-0.1
-0.2
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
-2.5
+0.5
-0.2
-0.2
-0.2
in planta
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-1.2
+0.3
-0.9
-0.6
-0.1
in planta
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-1.2
-0.2
-0.8
-0.7
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-2.4
-0.1
-0.3
+0.5
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-2.9
+0.7
-0.3
+0.2
-0.1
in planta
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
-1.5
-0.0
-0.6
+0.5
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
-2.5
+0.2
-0.1
+0.3
-0.1
stress
Bacitracin 0.25 mg/ml
-3.1
+0.1
+0.2
+1.0
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
-2.1
+0.7
-0.2
-0.1
-0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-2.2
+0.4
-0.5
+0.2
+0.1
in planta
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
-1.4
-0.1
-0.7
+0.8
+0.2
stress
Nickel (II) chloride 1 mM
-1.3
+0.1
-0.5
+1.0
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-1.9
+0.4
-0.4
+0.2
+0.6
phage
P. phyto PHYTO2 MOI 1
-2.2
+0.5
+0.1
+0.6
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.9
-0.3
-0.2
+1.4
+0.3
motility
outer cut, LB soft agar motility assay
-1.5
-0.1
+0.2
+1.1
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-2.4
+0.6
-0.2
+1.4
-0.0
phage
36hr PHYTO2 MOI 1
-1.1
-0.3
+0.3
+1.3
-0.7
stress
Benzethonium chloride 0.0016 mM
+0.9
+0.2
+0.5
-1.6
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.7
+0.3
-0.2
+0.5
+0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.6
+0.6
-0.2
+1.4
+0.1
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