Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS17420	BPHYT_RS17425	BPHYT_RS17430	BPHYT_RS17435	BPHYT_RS17440
phage	36hr PHYTO6 MOI 0.1	-0.3	+0.0	-0.8	N.D.	-1.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.3	+0.0	+0.0	N.D.	-2.5
phage	36hr PHYTO4 MOI 1	-0.3	-0.1	-1.2	N.D.	-0.6
phage	24hr PHYTO3 MOI 0.1	-0.0	-0.0	-1.2	N.D.	-0.5
phage	24hr PHYTO10 MOI 10	-0.1	-0.1	-0.9	N.D.	-0.7
phage	36hr PHYTO2 MOI 1	-0.2	+0.1	-0.8	N.D.	-0.8
phage	24hr PHYTO1 MOI 10	-0.1	+0.1	-1.0	N.D.	-0.7
phage	36hr PHYTO11 MOI 1	+0.0	-0.0	-1.7	N.D.	+0.0
phage	36hr PHYTO7 MOI 0.1	-0.0	+0.1	-0.6	N.D.	-1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.1	-1.1	N.D.	-0.1
no phage control	No phage control	-0.0	+0.1	-0.6	N.D.	-0.9
phage	24hr PHYTO2 MOI 1	-0.2	-0.1	-1.2	N.D.	+0.2
nitrogen source	L-Lysine (N)	+0.3	+0.3	-1.1	N.D.	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.5	-0.0	+0.4	N.D.	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	-0.1	-0.4	N.D.	-0.7
phage	36hr PHYTO10 MOI 10	+0.4	-0.2	-0.4	N.D.	-0.7
phage	24hr PHYTO6 MOI 1	+0.2	+0.0	-1.3	N.D.	+0.2
nophagecontrol	36hr Phyto Lib only	+0.2	+0.3	-1.2	N.D.	-0.1
supernatant control	Vogels_fungal_media; pH 5.5	+0.1	+0.1	+0.3	N.D.	-1.4
phage	P. phyto corn MOI 1	+0.1	-0.2	-0.9	N.D.	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.0	-1.2	N.D.	+0.9
carbon source	D-Glucose (C)	-0.4	+0.1	-0.7	N.D.	+0.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.1	-0.0	-1.2	N.D.	+0.8
nophagecontrol	24hr Phyto Lib Only	+0.2	-0.0	-1.0	N.D.	+0.5
phage	24hr PHYTO11 MOI 1	+0.2	-0.1	-0.9	N.D.	+0.7
phage	24hr PHYTO8 MOI 1	+0.1	-0.2	-1.0	N.D.	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	+0.3	-0.3	N.D.	-0.6
nophagecontrol	24hr Phyto Lib only	+0.4	-0.1	-0.9	N.D.	+0.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.1	-0.2	-0.1	N.D.	+1.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.2	-0.2	+1.9	N.D.	+0.5