Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS17340	BPHYT_RS17345	BPHYT_RS17350	BPHYT_RS17355	BPHYT_RS17360
carbon source	Phenylacetic 5 mM (C)	-2.6	-4.2	N.D.	-3.9	-2.8
carbon source	Phenylacetic 5 mM (C)	-4.4	-3.1	N.D.	-2.7	-2.9
carbon source	L-Phenylalanine (C)	-6.3	-1.9	N.D.	-0.0	-0.1
nitrogen source	L-Phenylalanine (N)	-4.0	-0.1	N.D.	-0.0	-0.0
stress	Nickel (II) chloride 1 mM	-0.6	-0.3	N.D.	-0.2	+0.0
phage	36hr PHYTO8 MOI 0.1	-0.7	-0.1	N.D.	-0.0	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	-0.4	N.D.	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.8	+0.1	N.D.	+0.2	-0.1
motility	outer cut, LB soft agar motility assay	-0.6	-0.4	N.D.	+0.3	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	+0.2	N.D.	-0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	+0.0	N.D.	+0.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	+0.1	N.D.	-0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	+0.0	N.D.	+0.2	+0.3
supernatant control	Vogels_fungal_media 0.1X	+0.4	-0.5	N.D.	+0.0	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	+0.2	N.D.	+0.2	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	-0.0	N.D.	+0.1	+0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.6	+0.4	N.D.	+0.1	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	+0.3	N.D.	+0.3	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.0	N.D.	+0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.4	N.D.	-0.2	+0.5
supernatant control	Vogels_fungal_media; pH 5.5	-0.2	-0.2	N.D.	+0.5	+0.2
phage	24hr PHYTO9 MOI 10	+0.4	-0.3	N.D.	+0.3	-0.1
phage	24hr PHYTO11 MOI 0.1	-0.0	+0.6	N.D.	+0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	+0.3	N.D.	+0.5	+0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.4	N.D.	+0.5	+0.1
phage	P. phyto PHYTO2 MOI 1	+0.6	-0.0	N.D.	+0.3	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.1	+0.3	N.D.	+0.5	+0.3
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.5	+0.6	N.D.	-0.1	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.3	+0.4	N.D.	+0.2	+0.2
stress	Lomefloxacin 0.001 mM	+1.0	+0.1	N.D.	+0.1	+0.0