Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS17295	BPHYT_RS17300	BPHYT_RS17305	BPHYT_RS17310	BPHYT_RS17315
carbon source	Dodecandioic (C)	-1.8	+0.2	+0.2	N.D.	N.D.
carbon source	Tween 20 (C)	-1.2	-0.1	-0.0	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.7	-0.8	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	-0.3	-0.0	N.D.	N.D.
phage	24hr PHYTO4 MOI 10	-0.5	-0.2	-0.3	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.4	-0.8	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	-0.3	-0.7	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.3	-0.7	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.6	-0.5	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.4	-0.6	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	-0.2	+0.0	N.D.	N.D.
phage	36hr PHYTO MOI 0.1	-0.2	-0.2	-0.4	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.2	-0.2	N.D.	N.D.
phage	24hr PHYTO10 MOI 10	-0.2	-0.1	-0.4	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.3	-0.7	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.4	-0.6	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	-0.4	+0.1	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.3	-0.5	N.D.	N.D.
phage	24hr PHYTO MOI 0.1	+0.2	-0.2	-0.5	N.D.	N.D.
phage	36hr PHYTO10 MOI 10	-0.4	-0.1	+0.2	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	+0.1	+0.3	N.D.	N.D.
phage	36hr PHYTO2 MOI 1	+0.2	-0.1	-0.4	N.D.	N.D.
nitrogen source	Putrescine (N)	-0.3	-0.1	+0.4	N.D.	N.D.
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.5	+0.0	+0.6	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	-0.2	-0.1	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	-0.3	+0.3	N.D.	N.D.
phage	24hr PHYTO9 MOI 10	+0.5	-0.1	+0.4	N.D.	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.2	+0.1	N.D.	N.D.
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.1	+0.4	+0.6	N.D.	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.7	+0.5	+0.4	N.D.	N.D.