Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS17270 and BPHYT_RS17275 overlap by 4 nucleotidesBPHYT_RS17275 and BPHYT_RS17280 are separated by 27 nucleotidesBPHYT_RS17280 and BPHYT_RS17285 are separated by 412 nucleotidesBPHYT_RS17285 and BPHYT_RS17290 are separated by 303 nucleotides BPHYT_RS17270: BPHYT_RS17270 - cell division protein FtsL, at 3,913,969 to 3,914,319 _RS17270 BPHYT_RS17275: BPHYT_RS17275 - 16S rRNA methyltransferase, at 3,914,316 to 3,915,257 _RS17275 BPHYT_RS17280: BPHYT_RS17280 - transcriptional regulator MraZ, at 3,915,285 to 3,915,713 _RS17280 BPHYT_RS17285: BPHYT_RS17285 - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 3,916,126 to 3,916,764 _RS17285 BPHYT_RS17290: BPHYT_RS17290 - porin, at 3,917,068 to 3,918,237 _RS17290
Group Condition BPHYT_RS17270 BPHYT_RS17275 BPHYT_RS17280 BPHYT_RS17285 BPHYT_RS17290
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -1.5
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -1.1
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. N.D. N.D. N.D. -1.1
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. N.D. N.D. N.D. -1.1
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days N.D. N.D. N.D. N.D. -1.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. N.D. N.D. -0.9
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.9
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. N.D. N.D. N.D. -0.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.8
carbon source Suberic (C) N.D. N.D. N.D. N.D. -0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. N.D. N.D. -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. N.D. N.D. N.D. -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.7
carbon source D-Alanine (C) N.D. N.D. N.D. N.D. -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. -0.7
phage 24hr PHYTO3 MOI 10 N.D. N.D. N.D. N.D. +0.8
phage 24hr PHYTO10 MOI 10 N.D. N.D. N.D. N.D. +0.8
phage 24hr PHYTO6 MOI 1 N.D. N.D. N.D. N.D. +0.9
phage 24hr PHYTO10 MOI 10 N.D. N.D. N.D. N.D. +0.9
phage 36hr PHYTO4 MOI 1 N.D. N.D. N.D. N.D. +1.2
phage 36hr PHYTO6 MOI 1 N.D. N.D. N.D. N.D. +1.2
phage 36hr PHYTO6 MOI 10 N.D. N.D. N.D. N.D. +1.2
phage 36hr PHYTO4 MOI 1 N.D. N.D. N.D. N.D. +1.3
phage 36hr PHYTO10 MOI 10 N.D. N.D. N.D. N.D. +1.5
phage 36hr PHYTO10 MOI 10 N.D. N.D. N.D. N.D. +1.5
phage 24hr PHYTO6 MOI 10 N.D. N.D. N.D. N.D. +2.0
phage 24hr PHYTO4 MOI 10 N.D. N.D. N.D. N.D. +2.5
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BPHYT_RS17270
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BPHYT_RS17275
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BPHYT_RS17290
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