Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS17260 and BPHYT_RS17265 overlap by 4 nucleotidesBPHYT_RS17265 and BPHYT_RS17270 overlap by 4 nucleotidesBPHYT_RS17270 and BPHYT_RS17275 overlap by 4 nucleotidesBPHYT_RS17275 and BPHYT_RS17280 are separated by 27 nucleotides BPHYT_RS17260: BPHYT_RS17260 - UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase, at 3,910,563 to 3,912,110 _RS17260 BPHYT_RS17265: BPHYT_RS17265 - cell division protein, at 3,912,107 to 3,913,972 _RS17265 BPHYT_RS17270: BPHYT_RS17270 - cell division protein FtsL, at 3,913,969 to 3,914,319 _RS17270 BPHYT_RS17275: BPHYT_RS17275 - 16S rRNA methyltransferase, at 3,914,316 to 3,915,257 _RS17275 BPHYT_RS17280: BPHYT_RS17280 - transcriptional regulator MraZ, at 3,915,285 to 3,915,713 _RS17280
Group Condition BPHYT_RS17260 BPHYT_RS17265 BPHYT_RS17270 BPHYT_RS17275 BPHYT_RS17280
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. -5.3 N.D. N.D. N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. -5.2 N.D. N.D. N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. -4.9 N.D. N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -4.5 N.D. N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -4.4 N.D. N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -4.4 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -4.3 N.D. N.D. N.D.
carbon source 2-Deoxy-D-Ribose (C) N.D. -4.3 N.D. N.D. N.D.
carbon source 2-Deoxy-D-Ribose (C) N.D. -4.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days N.D. -4.2 N.D. N.D. N.D.
carbon source Suberic (C) N.D. -4.2 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -4.2 N.D. N.D. N.D.
carbon source adipate (C) N.D. -4.2 N.D. N.D. N.D.
phage 36hr PHYTO2 MOI 1 N.D. -4.2 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. -4.1 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -3.2 N.D. N.D. N.D.
carbon source 2-Deoxy-D-Ribose (C) N.D. -3.1 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -3.1 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -3.0 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -3.0 N.D. N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -2.7 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. -2.7 N.D. N.D. N.D.
carbon source Disodium Glutarate (C) N.D. -2.6 N.D. N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. -2.6 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -2.6 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -2.6 N.D. N.D. N.D.
phage 36hr PHYTO10 MOI 10 N.D. -2.4 N.D. N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. -2.4 N.D. N.D. N.D.
pH LB, pH4 N.D. -2.3 N.D. N.D. N.D.
carbon source Tween 20 (C) N.D. -2.3 N.D. N.D. N.D.
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