Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS17075 and BPHYT_RS17080 are separated by 81 nucleotidesBPHYT_RS17080 and BPHYT_RS17085 are separated by 154 nucleotidesBPHYT_RS17085 and BPHYT_RS17090 are separated by 187 nucleotidesBPHYT_RS17090 and BPHYT_RS17095 are separated by 12 nucleotides BPHYT_RS17075: BPHYT_RS17075 - ABC transporter permease, at 3,870,780 to 3,871,709 _RS17075 BPHYT_RS17080: BPHYT_RS17080 - signal recognition particle protein, at 3,871,791 to 3,873,158 _RS17080 BPHYT_RS17085: BPHYT_RS17085 - hypoxanthine phosphoribosyltransferase, at 3,873,313 to 3,873,864 _RS17085 BPHYT_RS17090: BPHYT_RS17090 - membrane protein, at 3,874,052 to 3,874,651 _RS17090 BPHYT_RS17095: BPHYT_RS17095 - proline--tRNA ligase, at 3,874,664 to 3,876,400 _RS17095
Group Condition BPHYT_RS17075 BPHYT_RS17080 BPHYT_RS17085 BPHYT_RS17090 BPHYT_RS17095
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -3.9 N.D. -0.6 N.D. -3.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 N.D. +0.0 N.D. -5.2
phage PHYTO3 MOI 0.1 -0.4 N.D. +0.5 N.D. -6.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -2.0 N.D. -0.5 N.D. -3.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.7 N.D. -0.8 N.D. -3.0
phage 36hr PHYTO1 MOI 10 -0.6 N.D. +0.0 N.D. -4.8
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -1.5 N.D. +0.1 N.D. -4.1
phage 36hr PHYTO10 MOI 10 +0.6 N.D. +0.2 N.D. -5.9
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -3.3 N.D. -0.0 N.D. -1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 N.D. -0.5 N.D. -3.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.2 N.D. -0.2 N.D. -3.6
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.4 N.D. +0.0 N.D. -3.6
phage 24hr PHYTO10 MOI 10 -0.4 N.D. +0.1 N.D. -4.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.5 N.D. +0.0 N.D. -3.3
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.8 N.D. -0.2 N.D. -3.7
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.5 N.D. -0.2 N.D. -3.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.6 N.D. -1.0 N.D. -2.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.0 N.D. +0.0 N.D. -3.6
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -3.9 N.D. +0.2 N.D. -0.9
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 N.D. -0.0 N.D. -3.5
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -2.0 N.D. +0.4 N.D. -2.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.7 N.D. +0.7 N.D. -3.4
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.8 N.D. +0.4 N.D. -3.8
phage 24hr PHYTO1 MOI 10 +0.4 N.D. -0.2 N.D. -4.4
vitamin With vitamins t2 -0.7 N.D. +0.5 N.D. -3.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 N.D. +0.3 N.D. -3.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.9 N.D. +0.3 N.D. -3.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.0 N.D. +0.6 N.D. -3.4
phage 24hr PHYTO4 MOI 10 +0.6 N.D. +0.1 N.D. -4.1
phage 24hr PHYTO3 MOI 10 +0.1 N.D. +0.7 N.D. -4.0
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