Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS17070 and BPHYT_RS17075 are separated by 9 nucleotidesBPHYT_RS17075 and BPHYT_RS17080 are separated by 81 nucleotidesBPHYT_RS17080 and BPHYT_RS17085 are separated by 154 nucleotidesBPHYT_RS17085 and BPHYT_RS17090 are separated by 187 nucleotides BPHYT_RS17070: BPHYT_RS17070 - pyrimidine deaminase, at 3,870,447 to 3,870,770 _RS17070 BPHYT_RS17075: BPHYT_RS17075 - ABC transporter permease, at 3,870,780 to 3,871,709 _RS17075 BPHYT_RS17080: BPHYT_RS17080 - signal recognition particle protein, at 3,871,791 to 3,873,158 _RS17080 BPHYT_RS17085: BPHYT_RS17085 - hypoxanthine phosphoribosyltransferase, at 3,873,313 to 3,873,864 _RS17085 BPHYT_RS17090: BPHYT_RS17090 - membrane protein, at 3,874,052 to 3,874,651 _RS17090
Group Condition BPHYT_RS17070 BPHYT_RS17075 BPHYT_RS17080 BPHYT_RS17085 BPHYT_RS17090
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. -3.9 N.D. -0.6 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. -3.9 N.D. +0.2 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. -3.3 N.D. -0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -1.5 N.D. -1.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.4 N.D. -1.4 N.D.
motility outer cut, LB soft agar motility assay N.D. -1.4 N.D. -1.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -1.2 N.D. -1.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -1.6 N.D. -1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -1.7 N.D. -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -1.9 N.D. -0.6 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. -2.0 N.D. -0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.7 N.D. -1.8 N.D.
stress Nickel (II) chloride 1 mM N.D. -2.2 N.D. -0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.4 N.D. -0.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. -2.1 N.D. -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -1.2 N.D. -0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.4 N.D. -0.7 N.D.
motility inner cut, LB soft agar motility assay N.D. -1.2 N.D. -0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -1.5 N.D. -0.4 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. -2.0 N.D. +0.4 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. -2.0 N.D. +0.4 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. -1.7 N.D. +0.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. -1.7 N.D. +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -1.7 N.D. +0.5 N.D.
stress Paraquat dichloride 0.064 mg/ml N.D. -1.6 N.D. +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -1.7 N.D. +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.6 N.D. +0.7 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -0.2 N.D. +2.3 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. -0.4 N.D. +2.6 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.0 N.D. +2.8 N.D.
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