Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS17055 and BPHYT_RS17060 are separated by 698 nucleotidesBPHYT_RS17060 and BPHYT_RS17065 are separated by 551 nucleotidesBPHYT_RS17065 and BPHYT_RS17070 overlap by 4 nucleotidesBPHYT_RS17070 and BPHYT_RS17075 are separated by 9 nucleotides BPHYT_RS17055: BPHYT_RS17055 - ribonucleotide-diphosphate reductase subunit beta, at 3,864,363 to 3,865,598 _RS17055 BPHYT_RS17060: BPHYT_RS17060 - ribonucleotide-diphosphate reductase subunit alpha, at 3,866,297 to 3,869,302 _RS17060 BPHYT_RS17065: BPHYT_RS17065 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 3,869,854 to 3,870,450 _RS17065 BPHYT_RS17070: BPHYT_RS17070 - pyrimidine deaminase, at 3,870,447 to 3,870,770 _RS17070 BPHYT_RS17075: BPHYT_RS17075 - ABC transporter permease, at 3,870,780 to 3,871,709 _RS17075
Group Condition BPHYT_RS17055 BPHYT_RS17060 BPHYT_RS17065 BPHYT_RS17070 BPHYT_RS17075
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. N.D. N.D. N.D. -3.9
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. N.D. N.D. N.D. -3.9
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -3.3
stress Nickel (II) chloride 1 mM N.D. N.D. N.D. N.D. -2.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -2.1
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. N.D. N.D. N.D. -2.0
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -2.0
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -2.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. -1.9
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -1.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. N.D. -1.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. N.D. N.D. N.D. -1.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -1.7
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. N.D. N.D. N.D. -1.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -1.6
stress Paraquat dichloride 0.064 mg/ml N.D. N.D. N.D. N.D. -1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. N.D. -1.6
phage 24hr PHYTO11 MOI 1 N.D. N.D. N.D. N.D. -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. N.D. -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. N.D. -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. N.D. -1.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. -1.5
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days N.D. N.D. N.D. N.D. -1.5
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -1.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. N.D. N.D. N.D. -1.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. -1.4
stress Cephalothin 2 mg/ml N.D. N.D. N.D. N.D. +1.4
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