Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS16945 and BPHYT_RS16950 are separated by 36 nucleotidesBPHYT_RS16950 and BPHYT_RS16955 overlap by 4 nucleotidesBPHYT_RS16955 and BPHYT_RS16960 are separated by 1097 nucleotidesBPHYT_RS16960 and BPHYT_RS16965 are separated by 399 nucleotides BPHYT_RS16945: BPHYT_RS16945 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 3,842,330 to 3,843,010 _RS16945 BPHYT_RS16950: BPHYT_RS16950 - 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) (from data), at 3,843,047 to 3,844,099 _RS16950 BPHYT_RS16955: BPHYT_RS16955 - IclR family transcriptional regulator, at 3,844,096 to 3,845,088 _RS16955 BPHYT_RS16960: BPHYT_RS16960 - hypothetical protein, at 3,846,186 to 3,846,638 _RS16960 BPHYT_RS16965: BPHYT_RS16965 - transposase, at 3,847,038 to 3,848,315 _RS16965
Group Condition BPHYT_RS16945 BPHYT_RS16950 BPHYT_RS16955 BPHYT_RS16960 BPHYT_RS16965
carbon source D-Galactose (C) -6.2 -3.4 -3.1 -0.1 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -2.8 -0.7 +0.4 -0.3 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -2.4 -0.6 -0.1 -0.3 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -1.8 -0.8 -0.0 -0.4 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -1.6 -0.5 -0.0 +0.1 N.D.
carbon source L-Arabinose (C) -2.6 +0.9 -0.6 +0.3 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -1.2 -0.5 -0.3 +0.1 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -1.3 -0.4 -0.2 +0.2 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -2.0 +1.4 -0.3 +0.1 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.4 +0.5 +0.3 +0.6 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 +0.9 +0.0 +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 +1.3 +0.1 -0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.1 +1.6 -0.2 -0.4 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.4 +1.0 +0.2 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.3 +1.8 -0.1 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.9 +0.5 +0.6 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -2.7 +4.9 -0.1 -0.2 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.4 +0.9 +0.4 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +1.0 +0.0 +0.3 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 +1.8 +0.1 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -0.7 +2.6 -0.2 +0.2 N.D.
carbon source Disodium Glutarate (C) -0.1 +1.5 +0.4 +0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.1 +3.0 -0.1 -0.6 N.D.
carbon source D-Glucose (C) +0.4 +0.4 +0.3 +1.1 N.D.
carbon source Suberic (C) +0.3 +0.5 +0.3 +1.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.6 +2.6 -0.3 -0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 +3.3 -0.2 -0.4 N.D.
carbon source Disodium Glutarate (C) +0.1 +1.6 +0.4 +0.8 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 +2.9 -0.2 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.5 +3.2 +0.4 +0.1 N.D.
remove
BPHYT_RS16945
plot		 remove
BPHYT_RS16950
plot		 remove
BPHYT_RS16955		 remove
BPHYT_RS16960
plot		 remove
BPHYT_RS16965
plot