Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS16930 and BPHYT_RS16935 are separated by 133 nucleotidesBPHYT_RS16935 and BPHYT_RS16940 are separated by 130 nucleotidesBPHYT_RS16940 and BPHYT_RS16945 overlap by 4 nucleotidesBPHYT_RS16945 and BPHYT_RS16950 are separated by 36 nucleotides BPHYT_RS16930: BPHYT_RS16930 - D-galactose ABC transporter, ATPase component (from data), at 3,838,756 to 3,840,294 _RS16930 BPHYT_RS16935: BPHYT_RS16935 - D-galactose ABC transporter, substrate-binding component (from data), at 3,840,428 to 3,841,426 _RS16935 BPHYT_RS16940: BPHYT_RS16940 - short-chain dehydrogenase, at 3,841,557 to 3,842,333 _RS16940 BPHYT_RS16945: BPHYT_RS16945 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 3,842,330 to 3,843,010 _RS16945 BPHYT_RS16950: BPHYT_RS16950 - 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) (from data), at 3,843,047 to 3,844,099 _RS16950
Group Condition BPHYT_RS16930 BPHYT_RS16935 BPHYT_RS16940 BPHYT_RS16945 BPHYT_RS16950
carbon source D-Galactose (C) -2.1 -2.1 -2.2 -6.2 -3.4
carbon source L-Arabinose (C) -1.0 -1.5 -1.4 -2.6 +0.9
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.3 +0.0 +0.3 -2.8 -0.7
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.3 -0.3 -2.4 -0.6
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.0 -0.3 -1.8 -0.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.1 -0.1 -1.6 -0.5
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.2 -0.0 -1.1 -0.4
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.1 -0.1 -1.2 -0.5
carbon source Tween 20 (C) +0.0 +0.3 -0.6 -0.4 -0.8
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.1 -0.0 -1.4 +0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.1 -0.4 +0.6 -2.0 +1.4
phage 24hr PHYTO10 MOI 10 -0.0 -0.3 -0.7 -0.1 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 -0.2 +0.4 -0.8 +0.1
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.2 -0.2 -0.8 +0.9
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.2 +0.3 -0.4 +1.3
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.1 -0.1 -0.5 -2.7 +4.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.4 +0.2 -0.2 +0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 -0.1 +0.1 -0.2 +1.8
carbon source Disodium Glutarate (C) -0.1 +0.3 +0.1 -0.1 +1.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -0.0 +0.2 +0.5 +1.0
carbon source D-Xylose (C) -0.1 +0.3 +0.5 +0.3 +1.0
carbon source Disodium Glutarate (C) -0.1 +0.1 +0.1 +0.1 +1.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 +0.0 +0.3 -0.1 +1.6
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -0.0 +0.0 +0.0 -0.7 +2.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.1 -0.1 -0.4 -0.1 +3.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.0 -0.2 -0.4 +0.6 +2.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 -0.2 -0.4 +0.1 +3.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 -0.0 -0.4 +0.3 +2.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.1 +0.4 +0.4 +0.3 +1.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.0 +0.4 -0.1 +0.5 +3.2
remove
BPHYT_RS16930
plot		 remove
BPHYT_RS16935
plot		 remove
BPHYT_RS16940		 remove
BPHYT_RS16945
plot		 remove
BPHYT_RS16950
plot