Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS16880 and BPHYT_RS16885 are separated by 231 nucleotidesBPHYT_RS16885 and BPHYT_RS16890 are separated by 112 nucleotidesBPHYT_RS16890 and BPHYT_RS16895 are separated by 66 nucleotidesBPHYT_RS16895 and BPHYT_RS16900 are separated by 23 nucleotides BPHYT_RS16880: BPHYT_RS16880 - malic enzyme, at 3,828,208 to 3,830,547 _RS16880 BPHYT_RS16885: BPHYT_RS16885 - thiamine monophosphate kinase, at 3,830,779 to 3,831,777 _RS16885 BPHYT_RS16890: BPHYT_RS16890 - phosphatidylglycerophosphatase, at 3,831,890 to 3,832,348 _RS16890 BPHYT_RS16895: BPHYT_RS16895 - competence damage-inducible protein A, at 3,832,415 to 3,832,915 _RS16895 BPHYT_RS16900: BPHYT_RS16900 - hypothetical protein, at 3,832,939 to 3,833,457 _RS16900
Group Condition BPHYT_RS16880 BPHYT_RS16885 BPHYT_RS16890 BPHYT_RS16895 BPHYT_RS16900
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -5.2 N.D. N.D. +0.0 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -4.8 N.D. N.D. -0.3 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -4.1 N.D. N.D. -0.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -4.2 N.D. N.D. +0.1 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -4.1 N.D. N.D. +0.3 -0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.4 N.D. N.D. -0.2 +0.2
carbon source L-Asparagine (C) -3.7 N.D. N.D. -0.0 +0.3
carbon source Protocatechuic Acid (C) -3.1 N.D. N.D. -0.1 -0.1
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 -3.6 N.D. N.D. +0.3 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.1 N.D. N.D. +0.3 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -1.3 N.D. N.D. -1.5 +0.0
carbon source succinate (C) -2.9 N.D. N.D. -0.1 +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -2.1 N.D. N.D. -0.7 +0.2
tn7 efficiency Outgrowth after Tn7 transformation -2.5 N.D. N.D. -0.0 -0.1
nitrogen source L-Asparagine (N) -2.6 N.D. N.D. +0.0 -0.1
nitrogen source L-Serine (N) -2.3 N.D. N.D. -0.1 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.7 N.D. N.D. +0.2 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -2.2 N.D. N.D. -0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.2 N.D. N.D. -0.1 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.3 N.D. N.D. +0.2 -0.1
carbon source succinate (C) -2.1 N.D. N.D. +0.1 +0.1
carbon source L-Glutamine (C) -1.9 N.D. N.D. +0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.3 N.D. N.D. +0.5 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.9 N.D. N.D. -0.1 +0.2
carbon source L-Arginine (C) -1.8 N.D. N.D. +0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.9 N.D. N.D. +0.2 +0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +1.1 N.D. N.D. -1.5 +0.1
nitrogen source L-Lysine (N) +1.8 N.D. N.D. -1.1 -0.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +2.1 N.D. N.D. -1.7 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +2.3 N.D. N.D. -1.6 +0.0
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BPHYT_RS16880
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