Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS16865	BPHYT_RS16875	BPHYT_RS16880	BPHYT_RS16885	BPHYT_RS16890
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.1	-5.2	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.1	-4.8	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	-0.1	-4.2	N.D.	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.1	-0.1	-4.1	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	-0.0	-4.1	N.D.	N.D.
carbon source	L-Asparagine (C)	-0.3	-0.0	-3.7	N.D.	N.D.
carbon source	Protocatechuic Acid (C)	-0.5	-0.2	-3.1	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.1	-3.4	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.4	-3.1	N.D.	N.D.
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	+0.1	+0.1	-3.6	N.D.	N.D.
carbon source	succinate (C)	-0.1	-0.0	-2.9	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7	-0.2	-1.9	N.D.	N.D.
nitrogen source	L-Asparagine (N)	-0.4	+0.2	-2.6	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.1	-2.3	N.D.	N.D.
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.4	-0.4	-1.8	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.1	-2.7	N.D.	N.D.
carbon source	Suberic (C)	-0.6	-0.1	-1.7	N.D.	N.D.
tn7 efficiency	Outgrowth after Tn7 transformation	-0.1	+0.3	-2.5	N.D.	N.D.
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.2	+0.1	-2.2	N.D.	N.D.
nitrogen source	L-Serine (N)	-0.2	+0.2	-2.3	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	+0.3	-2.3	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.0	-2.2	N.D.	N.D.
carbon source	succinate (C)	+0.0	+0.2	-2.1	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.2	-1.9	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.1	-1.9	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	+0.4	-1.3	N.D.	N.D.
carbon source	Phenylacetic 5 mM (C)	-0.2	-0.4	+1.8	N.D.	N.D.
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.2	-0.1	+2.1	N.D.	N.D.
nitrogen source	L-Lysine (N)	+0.6	+0.3	+1.8	N.D.	N.D.
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.5	+0.2	+2.3	N.D.	N.D.