Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS16845 and BPHYT_RS16850 are separated by 114 nucleotidesBPHYT_RS16850 and BPHYT_RS16855 are separated by 19 nucleotidesBPHYT_RS16855 and BPHYT_RS16860 are separated by 135 nucleotidesBPHYT_RS16860 and BPHYT_RS16865 are separated by 16 nucleotides BPHYT_RS16845: BPHYT_RS16845 - spermidine synthase, at 3,823,161 to 3,824,033 _RS16845 BPHYT_RS16850: BPHYT_RS16850 - glyoxalase, at 3,824,148 to 3,824,561 _RS16850 BPHYT_RS16855: BPHYT_RS16855 - 16S rRNA methyltransferase, at 3,824,581 to 3,825,321 _RS16855 BPHYT_RS16860: BPHYT_RS16860 - barnase inhibitor, at 3,825,457 to 3,826,017 _RS16860 BPHYT_RS16865: BPHYT_RS16865 - ribonuclease, at 3,826,034 to 3,826,450 _RS16865
Group Condition BPHYT_RS16845 BPHYT_RS16850 BPHYT_RS16855 BPHYT_RS16860 BPHYT_RS16865
carbon source Malonic (C) -0.3 +0.2 -0.4 N.D. -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -0.3 +0.3 N.D. -0.7
phage 36hr PHYTO4 MOI 1 +0.1 -0.1 +0.4 N.D. -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -0.2 +0.5 N.D. -0.5
phage 36hr PHYTO2 MOI 1 -0.4 +0.1 +0.9 N.D. -0.8
phage 36hr PHYTO6 MOI 0.1 -0.2 +0.1 +0.5 N.D. -0.5
phage 36hr PHYTO6 MOI 0.1 -0.1 +0.1 +0.6 N.D. -0.6
stress Bacitracin 0.25 mg/ml +0.1 +0.3 +0.4 N.D. -0.7
phage 24hr PHYTO4 MOI 0.1 +0.5 -0.2 +0.4 N.D. -0.5
phage 24hr PHYTO1 MOI 10 +0.3 +0.1 +0.4 N.D. -0.7
nophagecontrol 24hr Phyto Lib Only +0.4 -0.0 +0.5 N.D. -0.6
motility outer cut, LB soft agar motility assay -0.4 -0.5 +0.3 N.D. +0.8
phage 36hr PHYTO10 MOI 1 +0.5 +0.1 +0.3 N.D. -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 -0.1 +0.6 N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 +0.0 +0.8 N.D. -0.3
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.5 +0.2 +0.6 N.D. -0.5
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 +0.0 +0.3 +0.8 N.D. +0.2
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.1 +0.2 +1.1 N.D. +0.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.2 -0.1 +0.6 N.D. +0.7
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.3 +0.3 +1.0 N.D. +0.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.0 +0.7 +0.6 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.3 +1.7 N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.3 +1.5 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.3 +1.6 N.D. -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.4 +1.4 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.4 +2.0 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.5 +1.6 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.4 +2.0 N.D. -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.5 +2.4 N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.6 +2.6 N.D. -0.2
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