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Cofit
Protein
Homologs
Fitness for 5 genes in
Burkholderia phytofirmans PsJN
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BPHYT_RS16830 and BPHYT_RS16835 are separated by 116 nucleotides
BPHYT_RS16835 and BPHYT_RS16840 are separated by 95 nucleotides
BPHYT_RS16840 and BPHYT_RS16845 are separated by 278 nucleotides
BPHYT_RS16845 and BPHYT_RS16850 are separated by 114 nucleotides
BPHYT_RS16830: BPHYT_RS16830 - GntR family transcriptional regulator, at 3,818,946 to 3,819,638
_RS16830
BPHYT_RS16835: BPHYT_RS16835 - glyceraldehyde-3-phosphate dehydrogenase, at 3,819,755 to 3,820,765
_RS16835
BPHYT_RS16840: BPHYT_RS16840 - transketolase, at 3,820,861 to 3,822,882
_RS16840
BPHYT_RS16845: BPHYT_RS16845 - spermidine synthase, at 3,823,161 to 3,824,033
_RS16845
BPHYT_RS16850: BPHYT_RS16850 - glyoxalase, at 3,824,148 to 3,824,561
_RS16850
Group
Condition
BPHYT
_RS16830
BPHYT
_RS16835
BPHYT
_RS16840
BPHYT
_RS16845
BPHYT
_RS16850
carbon source
L-Glutamine (C)
-0.3
-7.8
-4.5
-0.1
-0.2
carbon source
L-Tryptophan (C)
-0.3
-7.9
-4.5
+0.0
-0.1
carbon source
L-Asparagine (C)
-0.5
-7.2
-4.4
-0.1
+0.0
carbon source
pyruvate (C)
+0.2
-8.0
-4.3
+0.0
+0.1
carbon source
Phenylacetic 5 mM (C)
-0.4
-7.5
-4.0
+0.1
-0.1
nitrogen source
Ammonium chloride (N)
-0.0
-7.6
-4.1
-0.2
+0.3
carbon source
Tween 20 (C)
-0.0
-7.4
-4.1
+0.1
-0.0
nitrogen source
NAG (N)
-0.5
-5.4
-4.6
-0.5
-0.3
carbon source
D-Lactate (C)
-0.1
-7.2
-4.0
-0.0
+0.2
carbon source
D,L-Lactate (C)
+0.0
-6.7
-4.3
-0.0
+0.0
carbon source
D-Xylose (C)
-0.3
-7.2
-3.4
+0.1
-0.1
carbon source
L-Phenylalanine (C)
-0.2
-6.3
-4.3
-0.0
-0.0
carbon source
Protocatechuic Acid (C)
-0.1
-7.3
-3.0
-0.2
-0.1
carbon source
L-Rhamnose (C)
-0.2
-6.7
-3.8
+0.1
+0.0
carbon source
L-Proline (C)
+0.0
-7.0
-4.0
+0.1
+0.2
carbon source
L-Malic (C)
+0.1
-6.6
-4.1
+0.1
-0.1
nitrogen source
L-Asparagine (N)
-0.3
-5.3
-4.9
-0.1
+0.1
carbon source
L-Alanine (C)
-0.2
-6.3
-4.2
+0.2
+0.1
nutrient
Min media with glucose
-0.0
-6.2
-4.2
+0.1
-0.0
carbon source
D-Glucose (C)
-0.2
-6.0
-4.0
+0.0
-0.2
carbon source
D-Glucose (C)
-0.2
-5.9
-3.9
-0.2
-0.2
carbon source
D-Sorbitol (C)
+0.0
-5.5
-4.6
-0.1
-0.1
carbon source
D-Fructose (C)
-0.0
-6.4
-3.4
-0.2
-0.1
nitrogen source
D-Alanine (N)
-0.0
-4.6
-4.9
-0.2
-0.4
nitrogen source
L-Serine (N)
-0.2
-4.9
-4.8
+0.0
-0.1
nitrogen source
L-Lysine (N)
-0.3
-4.7
-4.9
+0.2
-0.2
carbon source
Putrescine (C)
-0.4
-6.0
-3.4
+0.1
-0.0
carbon source
D-Glucose (C)
+0.0
-6.6
-3.2
+0.1
+0.1
carbon source
Trisodium citrate (C)
-0.7
-6.3
-2.6
+0.2
+0.1
carbon source
L-Lactate (C)
+0.3
-5.1
-4.4
+0.0
-0.0
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