Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS16685	BPHYT_RS16690	BPHYT_RS16695	BPHYT_RS16700	BPHYT_RS16705
nitrogen source	L-Glutamic (N)	N.D.	-0.9	-1.3	-1.5	N.D.
phage	24hr PHYTO4 MOI 10	N.D.	-0.5	-0.3	-0.8	N.D.
nitrogen source	NAG (N)	N.D.	-0.5	-0.5	-0.3	N.D.
carbon source	L-Asparagine (C)	N.D.	-0.2	-0.2	-0.7	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.3	+0.4	-0.6	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	+0.2	+0.3	-0.7	N.D.
carbon source	L-Alanine (C)	N.D.	+0.5	+0.5	-0.2	N.D.
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	N.D.	+0.2	-0.1	+0.8	N.D.
nitrogen source	L-Phenylalanine (N)	N.D.	+0.4	+0.3	+0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.4	-0.2	+0.8	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.6	+0.4	+0.1	N.D.
vitamin	With vitamins t2	N.D.	+0.3	+0.4	+0.3	N.D.
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.4	+0.4	+0.3	N.D.
carbon source	Phenylacetic 5 mM (C)	N.D.	+0.3	+0.3	+0.5	N.D.
carbon source	D-Glucose (C)	N.D.	+0.6	+0.6	-0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.5	+0.5	N.D.
carbon source	D-Glucose 20 mM (C)	N.D.	+0.6	+0.4	+0.3	N.D.
vitamin	With vitamins t1	N.D.	+0.3	+0.5	+0.5	N.D.
carbon source	Phenylacetic 5 mM (C)	N.D.	+0.6	+0.2	+0.6	N.D.
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	+0.3	+0.4	+0.6	N.D.
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.4	+0.7	+0.3	N.D.
vitamin	No vitamins t1	N.D.	+0.5	+0.4	+0.6	N.D.
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.3	+0.8	+0.4	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.5	+0.2	+0.8	N.D.
carbon source	D-Glucose 20 mM (C)	N.D.	+0.7	+0.4	+0.6	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.6	+0.3	+0.9	N.D.
vitamin	No vitamins t2	N.D.	+0.5	+0.5	+0.8	N.D.
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.6	+0.6	+0.8	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.5	+0.2	+1.2	N.D.
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	+0.6	+0.1	+4.2	N.D.