Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS16620 and BPHYT_RS16625 are separated by 35 nucleotidesBPHYT_RS16625 and BPHYT_RS16630 are separated by 177 nucleotidesBPHYT_RS16630 and BPHYT_RS16635 are separated by 104 nucleotidesBPHYT_RS16635 and BPHYT_RS16640 are separated by 31 nucleotides BPHYT_RS16620: BPHYT_RS16620 - holliday junction ATP-dependent DNA helicase RuvB, at 3,765,369 to 3,766,433 _RS16620 BPHYT_RS16625: BPHYT_RS16625 - hypothetical protein, at 3,766,469 to 3,767,410 _RS16625 BPHYT_RS16630: BPHYT_RS16630 - phosphoglycerate mutase, at 3,767,588 to 3,768,259 _RS16630 BPHYT_RS16635: BPHYT_RS16635 - D-aminoacyl-tRNA deacylase, at 3,768,364 to 3,768,822 _RS16635 BPHYT_RS16640: BPHYT_RS16640 - tyrosyl-tRNA synthetase, at 3,768,854 to 3,770,104 _RS16640
Group Condition BPHYT_RS16620 BPHYT_RS16625 BPHYT_RS16630 BPHYT_RS16635 BPHYT_RS16640
phage 36hr PHYTO7 MOI 0.1 N.D. -0.4 +0.3 N.D. N.D.
phage 36hr PHYTO8 MOI 0.1 N.D. -0.3 +0.3 N.D. N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent N.D. -0.4 +0.4 N.D. N.D.
phage 36hr PHYTO11 MOI 1 N.D. -0.3 +0.3 N.D. N.D.
phage 24hr PHYTO6 MOI 0.1 N.D. -0.2 +0.3 N.D. N.D.
phage 36hr PHYTO4 MOI 1 N.D. -0.3 +0.4 N.D. N.D.
phage 36hr PHYTO10 MOI 10 N.D. -0.3 +0.4 N.D. N.D.
phage 24hr PHYTO MOI 0.1 N.D. -0.2 +0.4 N.D. N.D.
phage 36hr PHYTO10 MOI 1 N.D. -0.3 +0.5 N.D. N.D.
phage 36hr PHYTO6 MOI 0.1 N.D. -0.2 +0.4 N.D. N.D.
phage 36hr PHYTO11 MOI 0.1 N.D. -0.1 +0.4 N.D. N.D.
phage 36hr PHYTO4 MOI 1 N.D. -0.1 +0.5 N.D. N.D.
nophagecontrol 36hr Phyto Lib Only N.D. -0.1 +0.5 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. +0.5 -0.0 N.D. N.D.
phage 36hr PHYTO8 MOI 10 N.D. -0.1 +0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days N.D. +0.3 +0.3 N.D. N.D.
phage 24hr PHYTO8 MOI 1 N.D. +0.2 +0.4 N.D. N.D.
carbon source L-Fucose (C) N.D. +0.2 +0.4 N.D. N.D.
nitrogen source L-Isoleucine (N) N.D. +0.1 +0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.2 +0.4 N.D. N.D.
motility outer cut, LB soft agar motility assay N.D. +0.1 +0.4 N.D. N.D.
phage 24hr PHYTO6 MOI 10 N.D. +0.0 +0.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.3 +0.3 N.D. N.D.
phage 24hr PHYTO9 MOI 0.1 N.D. +0.2 +0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.4 +0.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.3 +0.3 N.D. N.D.
phage 36hr PHYTO2 MOI 1 N.D. +0.2 +0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.4 +0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.4 +0.4 N.D. N.D.
phage 36hr PHYTO2 MOI 1 N.D. +0.2 +0.6 N.D. N.D.
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