Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS16505	BPHYT_RS16510	BPHYT_RS16515	BPHYT_RS16520	BPHYT_RS16525
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.1	-1.2	-0.5	-0.4	N.D.
phage	24hr PHYTO3 MOI 0.1	+0.1	+0.0	-1.5	-0.1	N.D.
phage	24hr PHYTO10 MOI 1	-0.0	+0.3	-1.2	-0.4	N.D.
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.0	-1.1	-0.3	+0.3	N.D.
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.2	-0.9	-0.4	+0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.6	+0.5	+0.1	N.D.
carbon source	D-Glucosamine Hydrochloride (C)	-2.0	+0.7	+0.2	+0.3	N.D.
phage	36hr PHYTO2 MOI 1	+0.0	+0.2	-1.1	+0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	+0.6	-0.9	+0.1	N.D.
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.7	-0.3	+0.8	-0.1	N.D.
phage	P. phyto PHYTO2 MOI 0.1	+0.4	+0.3	-1.1	+0.1	N.D.
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.9	-0.1	-0.2	+0.9	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.7	+0.0	-0.3	N.D.
nophagecontrol	24hr Phyto Lib Only	+0.3	+0.3	-1.1	+0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.8	+0.6	+0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	+0.3	+0.6	-0.3	N.D.
nutrient	casaminos	-0.7	-0.2	+0.6	+0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.3	-0.5	+0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.7	-0.2	-0.6	+0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.8	-0.6	+0.2	+0.3	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	+0.4	-0.5	-0.0	N.D.
motility	inner cut, LB soft agar motility assay	+0.8	+0.7	-0.6	+0.3	N.D.
phage	36hr PHYTO11 MOI 0.1	+0.4	+0.1	+0.9	-0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	+1.0	+0.4	-0.1	+0.1	N.D.
phage	24hr PHYTO3 MOI 10	+1.0	+0.5	+0.1	-0.0	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.5	+0.6	+0.4	+0.1	N.D.
carbon source	Malonic (C)	+0.5	+0.4	+0.7	+0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.8	+0.6	+0.7	+0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.9	+0.6	+0.7	+0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.7	+0.8	+1.1	+0.1	N.D.