Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS16495	BPHYT_RS16500	BPHYT_RS16505	BPHYT_RS16510	BPHYT_RS16515
vitamin	With vitamins t2	-0.9	-2.1	+0.2	-0.1	+0.1
nutrient	Min media with glucose	-1.0	-1.7	-0.3	-0.3	+0.5
vitamin	With vitamins t1	-1.2	-1.7	+0.1	+0.2	-0.1
nutrient	Min media with glucose	-1.2	-1.3	-0.2	-0.1	+0.3
phage	24hr PHYTO3 MOI 0.1	+0.8	-0.1	+0.1	+0.0	-1.5
phage	36hr PHYTO4 MOI 1	+0.6	-0.4	+0.2	+0.1	-1.1
phage	P. phyto PHYTO2 MOI 0.1	+0.6	-0.3	+0.4	+0.3	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	+0.3	-0.6	-0.6	+0.5
phage	24hr PHYTO2 MOI 1	+0.6	-0.6	+0.3	+0.5	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.5	-0.3	+0.6	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.6	+0.6	-0.9	-0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+1.0	+0.0	+0.1	-1.0
carbon source	D-Glucosamine Hydrochloride (C)	+0.7	+1.1	-2.0	+0.7	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	+0.7	+0.7	-0.2	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.1	+1.1	+0.1	-0.5	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.1	+0.6	-0.4	-0.8	+0.6
motility	inner cut, LB soft agar motility assay	+0.2	+0.1	+0.8	+0.7	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+0.5	+0.5	+0.3	-0.5
phage	24hr PHYTO3 MOI 10	+0.6	-0.6	+1.0	+0.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	+1.1	+0.6	-0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8	+0.9	+0.6	-0.1	+0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.9	+0.6	+0.1	-0.2	+0.9
stress	Paraquat dichloride 0.064 mg/ml	+0.9	+0.7	+0.4	-0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.1	+0.3	+0.9	+0.6	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.3	+0.1	+0.7	+0.8	+1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.0	+1.1	+0.6	+0.2	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.4	+1.5	+0.3	+0.2	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.9	+1.7	+0.4	+0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+2.3	+2.0	+0.0	+0.6	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+2.0	+2.2	+0.6	-0.2	-0.1