Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS16485	BPHYT_RS16490	BPHYT_RS16495	BPHYT_RS16500	BPHYT_RS16505
vitamin	With vitamins t2	-0.1	-1.6	-0.9	-2.1	+0.2
vitamin	With vitamins t1	-0.1	-1.4	-1.2	-1.7	+0.1
nutrient	Min media with glucose	-0.2	-1.3	-1.2	-1.3	-0.2
nutrient	Min media with glucose	-0.1	-1.1	-1.0	-1.7	-0.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-1.0	-1.2	-0.4	-0.1	+0.1
nutrient	L-Histidine	+0.1	-0.8	-0.7	-1.0	-0.1
nutrient	L-Histidine	-0.1	-0.8	-0.8	-0.7	-0.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.5	-1.1	+0.1	+0.2	-0.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.2	+0.7	-0.3	-0.6
phage	24hr PHYTO4 MOI 10	-0.9	+0.8	+0.3	-0.5	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.3	+0.1	+0.6	+0.6	-0.9
carbon source	D-Glucosamine Hydrochloride (C)	+0.2	+0.2	+0.7	+1.1	-2.0
supernatant control	Vogels_fungal_media; pH 5.5	-1.0	+0.2	+0.3	+0.3	+0.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.3	+0.4	+0.2	+0.9	-0.7
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.9	-1.0	+0.3	+0.7	-0.1
phage	24hr PHYTO3 MOI 10	-0.4	+0.4	+0.6	-0.6	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.4	+1.1	+0.6	-0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.8	+0.5	+0.2	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.6	+0.6	+0.5	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+1.3	+1.0	+0.8	-0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	+0.6	+0.8	+0.1	+0.6
stress	Paraquat dichloride 0.064 mg/ml	+0.0	+0.6	+0.9	+0.7	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.6	+0.3	+0.5	+1.1	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.7	+0.8	+0.9	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	+1.2	+1.1	+1.1	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.8	+1.0	+1.1	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+1.2	+1.4	+1.5	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	+1.8	+1.9	+1.7	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	+2.2	+2.0	+2.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	+2.2	+2.3	+2.0	+0.0