Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS16480	BPHYT_RS16485	BPHYT_RS16490	BPHYT_RS16495	BPHYT_RS16500
vitamin	With vitamins t2	+0.2	-0.1	-1.6	-0.9	-2.1
vitamin	With vitamins t1	+0.3	-0.1	-1.4	-1.2	-1.7
nutrient	Min media with glucose	+0.3	-0.2	-1.3	-1.2	-1.3
nutrient	Min media with glucose	+0.3	-0.1	-1.1	-1.0	-1.7
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.2	-1.0	-1.2	-0.4	-0.1
nutrient	L-Histidine	+0.2	+0.1	-0.8	-0.7	-1.0
nutrient	L-Histidine	+0.2	-0.1	-0.8	-0.8	-0.7
phage	24hr PHYTO4 MOI 10	+0.3	-0.9	+0.8	+0.3	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.4	-0.8	+0.1	+0.7	+0.5
phage	24hr PHYTO3 MOI 10	+0.4	-0.4	+0.4	+0.6	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.7	-0.1	+0.4	+0.7	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.7	-0.0	+0.8	+0.4	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-0.5	+0.5	-0.2	+0.6
nitrogen source	L-Lysine (N)	-0.6	+0.9	+0.7	+0.4	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	-0.0	+0.7	+0.7	+0.7
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.8	+0.9	-1.0	+0.3	+0.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.8	-0.5	+0.8	+0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.3	+0.1	+0.4	+1.0
stress	Paraquat dichloride 0.064 mg/ml	-0.3	+0.0	+0.6	+0.9	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	+0.6	+0.3	+0.5	+1.1
carbon source	D-Glucosamine Hydrochloride (C)	-0.2	+0.2	+0.2	+0.7	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	+0.3	+0.7	+0.8	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.4	+1.3	+1.0	+0.8
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6	+0.5	+0.6	+0.8	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	-0.1	+1.2	+1.1	+1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	-0.1	+0.8	+1.0	+1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+0.3	+1.2	+1.4	+1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.0	+1.8	+1.9	+1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.3	+2.2	+2.0	+2.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	+0.3	+2.2	+2.3	+2.0