Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS16360 and BPHYT_RS16365 are separated by 231 nucleotidesBPHYT_RS16365 and BPHYT_RS16370 are separated by 9 nucleotidesBPHYT_RS16370 and BPHYT_RS16375 are separated by 217 nucleotidesBPHYT_RS16375 and BPHYT_RS16380 are separated by 89 nucleotides BPHYT_RS16360: BPHYT_RS16360 - recombinase RecA, at 3,711,810 to 3,712,886 _RS16360 BPHYT_RS16365: BPHYT_RS16365 - transcriptional regulator, at 3,713,118 to 3,713,900 _RS16365 BPHYT_RS16370: BPHYT_RS16370 - histidine kinase, at 3,713,910 to 3,715,457 _RS16370 BPHYT_RS16375: BPHYT_RS16375 - major facilitator transporter, at 3,715,675 to 3,717,333 _RS16375 BPHYT_RS16380: BPHYT_RS16380 - tRNA-Met, at 3,717,423 to 3,717,499 _RS16380
Group Condition BPHYT_RS16360 BPHYT_RS16365 BPHYT_RS16370 BPHYT_RS16375 BPHYT_RS16380
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. -0.8 -0.5 -0.7 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. -0.7 -0.5 -0.4 N.D.
carbon source Malonic (C) N.D. -0.9 -0.7 -0.0 N.D.
carbon source L-Alanine (C) N.D. -0.5 -0.4 -0.4 N.D.
carbon source D,L-Lactate (C) N.D. -0.3 -0.4 -0.4 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. -0.5 -0.4 -0.3 N.D.
carbon source D,L-Lactate (C) N.D. -0.2 -0.4 -0.4 N.D.
phage PHYTO3 MOI 0.1 N.D. -0.3 -0.4 -0.2 N.D.
carbon source Malonic (C) N.D. -0.1 -1.0 +0.3 N.D.
supernatant control Vogels_fungal_media; pH 5.5 N.D. -0.4 -0.4 -0.0 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. -0.5 -0.4 +0.4 N.D.
carbon source adipate (C) N.D. -0.2 -0.3 +0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB N.D. +0.4 -0.7 +0.1 N.D.
phage 36hr PHYTO1 MOI 10 N.D. -0.2 +0.4 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.2 -0.3 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.2 -0.3 +0.3 N.D.
phage P. phyto corn MOI 1 N.D. -0.2 +0.4 +0.2 N.D.
phage 36hr PHYTO10 MOI 10 N.D. +0.3 +0.3 -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.2 +0.3 +0.4 N.D.
phage 24hr PHYTO6 MOI 10 N.D. +0.1 +0.5 -0.1 N.D.
nophagecontrol 36hr Phyto Lib only N.D. -0.2 +0.6 +0.1 N.D.
phage 36hr PHYTO11 MOI 1 N.D. +0.1 +0.6 -0.1 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. +0.3 -0.0 +0.4 N.D.
phage 24hr PHYTO6 MOI 0.1 N.D. +0.2 +0.4 +0.1 N.D.
phage 24hr PHYTO3 MOI 10 N.D. +0.4 +0.4 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.3 +0.4 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.4 +0.3 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.2 +0.4 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.2 +0.3 +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.3 +0.3 +0.7 N.D.
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