Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS16350	BPHYT_RS16355	BPHYT_RS16360	BPHYT_RS16365	BPHYT_RS16370
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-1.0	-2.0	N.D.	-0.5	-0.4
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.6	-0.5	N.D.	-0.7	-0.5
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.4	-0.7	N.D.	-0.8	-0.5
carbon source	Malonic (C)	-0.1	-0.3	N.D.	-0.9	-0.7
carbon source	2-Deoxy-D-Ribose (C)	-0.6	-0.7	N.D.	-0.2	-0.2
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.6	N.D.	-0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.8	-0.4	N.D.	-0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-0.3	-0.8	N.D.	-0.3	-0.1
carbon source	L-Alanine (C)	-0.3	-0.3	N.D.	-0.5	-0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.8	N.D.	-0.3	-0.1
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.1	-1.6	N.D.	+0.3	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-1.5	+0.5	N.D.	+0.4	-0.7
temperature	LB, 30C	-1.1	+0.2	N.D.	-0.1	-0.2
motility	outer cut, LB soft agar motility assay	-0.7	+0.3	N.D.	-0.3	-0.3
carbon source	Malonic (C)	-0.2	+0.5	N.D.	-0.1	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	-1.4	N.D.	+0.3	+0.3
phage	36hr PHYTO1 MOI 10	+0.3	-0.8	N.D.	-0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.9	N.D.	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.8	N.D.	+0.2	+0.4
phage	36hr PHYTO8 MOI 10	+0.5	-0.8	N.D.	-0.0	+0.5
phage	36hr PHYTO3 MOI 1	+0.8	-0.8	N.D.	-0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.8	N.D.	+0.3	+0.4
carbon source	Tween 20 (C)	-0.8	+0.3	N.D.	+0.6	+0.1
carbon source	Disodium Glutarate (C)	+0.9	-0.3	N.D.	-0.0	-0.3
carbon source	propionate (C)	+1.0	+0.0	N.D.	-0.3	-0.3
phage	24hr PHYTO3 MOI 10	+0.4	-0.3	N.D.	+0.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	-0.3	N.D.	+0.4	+0.3
phage	24hr PHYTO3 MOI 10	+1.0	-0.3	N.D.	+0.2	+0.2
nophagecontrol	36hr Phyto Lib only	+0.7	+0.2	N.D.	-0.1	+0.4
phage	24hr PHYTO6 MOI 0.1	+0.8	-0.2	N.D.	+0.2	+0.4