Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS16310	BPHYT_RS16315	BPHYT_RS16320	BPHYT_RS16325	BPHYT_RS16330
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-0.1	-3.8	N.D.	-0.0
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.1	+0.0	-3.8	N.D.	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.1	-2.6	N.D.	+0.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.6	+0.2	-2.5	N.D.	+0.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.1	-2.4	N.D.	-0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.0	+0.2	-2.0	N.D.	-0.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.4	+0.3	-2.8	N.D.	-0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.2	+0.1	-2.4	N.D.	-0.0
phage	P. phyto PHYTO2 MOI 1	+0.2	-0.2	-1.7	N.D.	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.0	-2.5	N.D.	+0.2
phage	36hr PHYTO2 MOI 1	-0.1	+0.1	-1.3	N.D.	-0.6
phage	24hr PHYTO10 MOI 10	-0.2	-0.2	-1.0	N.D.	-0.7
carbon source	L-Tryptophan (C)	-0.7	+0.0	-1.2	N.D.	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.0	-2.2	N.D.	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	+0.0	-1.9	N.D.	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.2	-1.9	N.D.	+0.1
carbon source	2-Deoxy-D-Ribose (C)	+0.2	+0.1	-1.8	N.D.	-0.1
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.2	+0.1	-1.7	N.D.	-0.2
phage	36hr PHYTO2 MOI 1	+0.2	+0.1	-1.0	N.D.	-0.8
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.0	+0.2	-1.5	N.D.	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.2	-1.6	N.D.	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.1	-1.7	N.D.	+0.2
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.3	-1.8	N.D.	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	+0.0	-1.8	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.2	-1.4	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.1	-1.8	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-0.1	-1.3	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+0.2	-1.3	N.D.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.5	-0.0	-1.0	N.D.	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.5	+0.1	-1.0	N.D.	+0.6