Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS16230 and BPHYT_RS16235 are separated by 94 nucleotidesBPHYT_RS16235 and BPHYT_RS16240 are separated by 99 nucleotidesBPHYT_RS16240 and BPHYT_RS16245 are separated by 10 nucleotidesBPHYT_RS16245 and BPHYT_RS16250 are separated by 118 nucleotides BPHYT_RS16230: BPHYT_RS16230 - C-5 sterol desaturase, at 3,684,599 to 3,685,561 _RS16230 BPHYT_RS16235: BPHYT_RS16235 - acylhydrolase, at 3,685,656 to 3,686,906 _RS16235 BPHYT_RS16240: BPHYT_RS16240 - translation factor Sua5, at 3,687,006 to 3,688,046 _RS16240 BPHYT_RS16245: BPHYT_RS16245 - phosphoribosylaminoimidazole carboxylase, at 3,688,057 to 3,689,253 _RS16245 BPHYT_RS16250: BPHYT_RS16250 - N5-carboxyaminoimidazole ribonucleotide mutase, at 3,689,372 to 3,689,890 _RS16250
Group Condition BPHYT_RS16230 BPHYT_RS16235 BPHYT_RS16240 BPHYT_RS16245 BPHYT_RS16250
carbon source L-Fucose (C) -0.0 -0.1 N.D. -6.5 -2.1
carbon source L-Phenylalanine (C) +0.0 +0.1 N.D. -7.4 -1.4
nitrogen source L-Serine (N) +0.4 +0.2 N.D. -4.7 -4.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.0 -0.1 N.D. -5.2 -2.9
carbon source D-Glucose 20 mM (C) -0.1 -0.1 N.D. -6.3 -1.3
carbon source D,L-Lactate (C) +0.0 +0.0 N.D. -6.8 -0.9
carbon source D-Lactate (C) +0.0 +0.0 N.D. -7.6 -0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.0 -0.4 N.D. -6.6 -0.6
carbon source Sebacic (C) -0.0 -0.0 N.D. -6.6 -1.0
carbon source pyruvate (C) +0.1 -0.0 N.D. -6.8 -0.6
carbon source D-Sorbitol (C) +0.1 -0.1 N.D. -6.8 -0.5
carbon source L-Rhamnose (C) +0.1 +0.0 N.D. -6.2 -1.2
carbon source Protocatechuic Acid (C) +0.1 -0.0 N.D. -5.9 -1.4
carbon source D-Gluconic Acid (C) +0.1 -0.0 N.D. -6.8 -0.4
carbon source succinate (C) +0.0 -0.0 N.D. -6.7 -0.3
carbon source L-Malic (C) -0.0 +0.1 N.D. -5.6 -1.3
nitrogen source L-Proline (N) +0.2 -0.1 N.D. -6.8 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 +0.1 N.D. -7.1 +0.5
carbon source Disodium Glutarate (C) +0.1 +0.1 N.D. -5.8 -1.0
carbon source Azelaic (C) +0.1 +0.0 N.D. -6.8 +0.1
carbon source m-Inositol (C) +0.0 -0.2 N.D. -6.6 +0.3
nitrogen source L-Citrulline (N) +0.0 -0.0 N.D. -6.7 +0.3
nitrogen source L-Phenylalanine (N) +0.1 -0.1 N.D. -6.7 +0.3
carbon source D-Galactose (C) +0.1 +0.1 N.D. -6.6 +0.4
nitrogen source L-Asparagine (N) +0.2 -0.1 N.D. -6.3 +0.3
nitrogen source D-Alanine (N) +0.0 +0.1 N.D. -6.7 +1.0
nitrogen source Ammonium chloride (N) -0.0 +0.1 N.D. -6.7 +1.4
nitrogen source Carnitine Hydrochloride (N) +0.0 +0.0 N.D. -6.2 +0.8
nitrogen source L-Glutamine (N) +0.1 +0.0 N.D. -6.1 +1.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.1 -0.2 N.D. +6.7 +1.8
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BPHYT_RS16230
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BPHYT_RS16235
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BPHYT_RS16250
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