Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS16205	BPHYT_RS16210	BPHYT_RS16215	BPHYT_RS16220	BPHYT_RS16225
pH	LB, pH4	+0.0	-7.8	-2.2	N.D.	-0.4
pH	LB, pH4	+0.0	-7.6	-2.1	N.D.	-0.3
motility	outer cut, LB soft agar motility assay	+0.0	-2.8	-3.8	N.D.	-0.4
motility	outer cut, LB soft agar motility assay	+0.1	-2.1	-4.1	N.D.	-0.4
motility	outer cut, LB soft agar motility assay	-0.0	-1.7	-4.1	N.D.	-0.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.1	-4.9	-1.3	N.D.	+0.0
stress	Zinc 0.5 mM	-0.1	-2.4	-3.0	N.D.	-0.0
motility	inner cut, LB soft agar motility assay	-0.1	-2.1	-2.7	N.D.	+0.0
motility	inner cut, LB soft agar motility assay	-0.1	-1.5	-2.9	N.D.	-0.4
motility	inner cut, LB soft agar motility assay	+0.0	-1.6	-2.6	N.D.	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	+0.2	-2.9	-1.1	N.D.	-0.1
temperature	LB 37C	-0.1	-1.7	-1.9	N.D.	-0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.2	-1.9	-1.2	N.D.	-0.8
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.0	-2.6	-1.0	N.D.	+0.0
temperature	LB 37C	+0.0	-2.0	-1.3	N.D.	-0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.2	-3.1	-0.4	N.D.	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.3	-4.0	+0.4	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-2.4	-0.7	N.D.	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.1	-2.6	-0.5	N.D.	+0.0
temperature	LB, 37C	+0.1	-1.4	-1.5	N.D.	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-2.3	-0.8	N.D.	-0.0
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.1	-1.5	-1.1	N.D.	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.2	-2.2	-0.4	N.D.	-0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-1.7	-0.2	N.D.	-0.7
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.2	-2.4	+0.1	N.D.	+0.3
phage	36hr PHYTO11 MOI 1	+0.2	+0.7	-1.4	N.D.	-0.7
phage	24hr PHYTO3 MOI 1	+0.1	+0.9	-1.0	N.D.	-0.8
phage	36hr PHYTO2 MOI 1	-0.2	+1.0	-0.8	N.D.	-0.8
phage	36hr PHYTO1 MOI 1	+0.2	+0.9	-1.0	N.D.	-0.9
phage	24hr PHYTO4 MOI 10	-0.0	+1.4	-0.9	N.D.	-0.4